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perl-Bio-Trace-ABIF

Parse ABIF files

Perl extension for reading and parsing ABIF (Applied Biosystems, Inc. Format) files.
Homepage:
Package version:1.01
Architecture:noarch
Distribution:Dag
Filename:perl-Bio-Trace-ABIF-1.01-1.el5.rf.noarch.rpm

/usr/share/doc/perl-Bio-Trace-ABIF-1.01/README

Bio-Trace-ABIF

The ABIF file format is a binary format for storing data, developed
by Applied Biosystems, Inc. This module provides general methods for reading
and overwriting ABIF files. Besides, it provides convenience methods for 
assessing the quality of the data (e.g., for computing LOR scores).

INSTALLATION

To install this module, run the following commands:

    perl Makefile.PL
    make
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/usr/share/man/man3/Bio::Trace::ABIF.3pm.gz

Bio::Trace::ABIF(User Contributed Perl DocumentatBio::Trace::ABIF(3)



NAME
       Bio::Trace::ABIF - Perl extension for reading and parsing
       ABIF (Applied Biosystems, Inc. Format) files

VERSION
       Version 1.01

SYNOPSIS
       The ABIF file format is a binary format for storing data
       (especially, those produced by sequencers), developed by
       Applied Biosystems, Inc. Typical
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/usr/share/doc/perl-Bio-Trace-ABIF-1.01/Changes

Revision history for Bio-Trace-ABIF

0.01    2006-10-26/17:30
        First version, released on an unsuspecting world.
        
0.02    2006-11-15/22:30
        Added method to compute CRL (Contiguous Read Length).
        A few bugs fixed in the documentation.

1.00    2007-02-16/12:30
        - Added methods to read all the ab1 file tags specified by the ABIF
          format, including fsa tag
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