Filewatcher File Search File Search
Catalog
Content Search
» » » » » »

maq

Mapping and Assembly with Qualities

Maq is a software that builds mapping assemblies from short reads generated by the next-generation sequencing machines. It is particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle AB SOLiD data.
Homepage:
Package version:0.7.1
Architecture:x86_64
Distribution:Dag
Filename:maq-0.7.1-1.el4.rf.x86_64.rpm

/usr/share/doc/maq-0.7.1/README

Mapass2 is a software that builds mapping assemblies from short reads
generated by the next-generation sequencing machines. It is particularly
designed for Illumina-Solexa 1G Genetic Analyzer, which typically
generates reads 25-35bp in length.

Mapass2 first aligns reads to reference sequences and then calls the
consensus. At the mapping stage, maq performs ungapped alignment.  For
single-end rea
more»

/usr/share/doc/maq-0.7.1/NEWS

Beta Release 0.7.1 (26 September, 2008)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Version 0.7.0 does not work with reads >63bp at all. I overlooked two
lines of codes which assume reads are 63bp or shorter. Now I have fixed
the bug and tested it on simulated long reads. It seems to work fine. I
am sorry for this obvious bug. No other things are changed since 0.7.0.

(0.7.1: 26 September 2008, r672)
more»

/usr/share/doc/maq-0.7.1/ChangeLog

------------------------------------------------------------------------
r666 | lh3lh3 | 2008-09-21 20:31:54 +0100 (Sun, 21 Sep 2008) | 2 lines
Changed paths:
   M /branches/lh3/maq/ChangeLog
   M /branches/lh3/maq/Makefile.generic
   M /branches/lh3/maq/configure.ac
   M /branches/lh3/maq/eland2maq.cc

updated novo2maq

------------------------------------------------------------------------
r665
more»

/usr/share/doc/maq-0.7.1/AUTHORS

Heng Li wrote all the codes of this project.


/usr/share/doc/maq-0.7.1/COPYING

                    GNU GENERAL PUBLIC LICENSE
                       Version 3, 29 June 2007

 Copy
more»

Browse inside maq-0.7.1-1.el4.rf.x86_64.rpm

891 B2014-11-29HEADER  view  443+ mirrors
         [DIR]usr/ (2)  65535+ mirrors

Download maq-0.7.1-1.el4.rf.x86_64.rpm

Results 1 - 1 of 1
Help - FTP Sites List - Software Dir.
Search over 15 billion files
© 1997-2017 FileWatcher.com