Filewatcher File Search File Search
Catalog
Content Search
» » » » » »

paml-data

Data files for PAML

Data files bundled with PAML.
Homepage:
Package version:4.4c
Architecture:x86_64
Distribution:Dag
Filename:paml-data-4.4c-1.el4.rf.x86_64.rpm

/usr/share/doc/paml-data-4.4c/examples/DatingSoftBound/readme.txt

MCMCTREE
Ziheng Yang

4 October 2005, modified in March 2007 & August 2009

(A) You can use the files in this folder to run mcmctree to duplicate the
results of Yang and Rannala (2006: table 3) and Rannala and Yang
(2007, table table 2).  

    ..\..\bin\mcmctree

Make your window wider (100 columns) before running the program.  See
the section on mcmctree in the paml manual for a desc
more»

/usr/share/doc/paml-data-4.4c/examples/HIVNSsites/README.txt

Notes by Ziheng Yang
Last modified 16 May 2003

This folder contains example data files for the HIV-1 env V3 region
analyzed in Yang et al. (2000).  This is the 10th data set analyzed
and the results are in table 12 in that paper.  The default
specification in the control file codeml.ctl

      NSsites = 0 1 2

will fit the onw-ratio model (M0), neutral (M0) and selection (M2)
models.  
more»

/usr/share/doc/paml-data-4.4c/examples/MHC.Swanson2002MBE/README.txt

Notes by Ziheng Yang
Last modified: 25 March 2009

(A) This is the MHC dataset analyzed by Yang & Swanson (2002: table 2) and
also Yang (2006: table 8.3 and figures 8.4 & 8.5).  Note that Yang &
Swanson implemented models M1 and M2 instead of M1a and M2a.  The
modified models M1a & M2a were introduced in 2004 (paml 3.14), so if
you run the current version of paml/codeml, the results for M1a
more»

/usr/share/doc/paml-data-4.4c/examples/MouseLemurs/README.txt

README.txt
Ziheng Yang, 27 January 2003


This folder contains files for the local-clock likelih
more»

/usr/share/doc/paml-data-4.4c/examples/MouseLemurs/README2.txt

README.txt
Ziheng Yang, January 2004

(A)  Overview

This folder includes the files used in Yan
more»

/usr/share/doc/paml-data-4.4c/examples/README.txt

Readme.txt

Updated November 2001

This folder contains a few files as well as sub folders with 
more»

/usr/share/doc/paml-data-4.4c/examples/TipDate/README.txt

readme.txt
30 October 2000, 24 January 2003 (modified), Ziheng Yang

Rambaut's TipDate model is i
more»

/usr/share/doc/paml-data-4.4c/examples/lysin/README.txt

Notes by Ziheng Yang
Last modified: 22 July2003

(I) Data files for NSsites models used by Yang, 
more»

Browse inside paml-data-4.4c-1.el4.rf.x86_64.rpm

686 B2014-11-30HEADER  view  873+ mirrors
         [DIR]usr/ (1)  65535+ mirrors

Download paml-data-4.4c-1.el4.rf.x86_64.rpm

Results 1 - 1 of 1
Help - FTP Sites List - Software Dir.
Search over 15 billion files
© 1997-2017 FileWatcher.com