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bioperl-run_1.6.9.orig.tar.gz

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Filename:bioperl-run_1.6.9.orig.tar.gz

/BioPerl-Run-1.006900/README

$Id$

o Version

 This is bioperl-run version 1.5.2, a developer release.

o Description 
 
 bioperl-run contain modules that provides a PERL interface to various
 bioinformatics applications. This allows various applications to be
 used with common bioperl objects.

 See the Changes file for more information about what is contained in
 here.

o Installation

 See the accompanying INSTALL file for
more»

/BioPerl-Run-1.006900/t/data/gumby/readme.txt

Data in this folder is that which is included with the gumby distribution, modified by Prabhakar et al. from data from:

Chapman M.A., Donaldson I.J., Gilbert J., Grafham D., Rogers J., Green A.R., G?ttgens B. (2004). "Analysis of multiple genomic sequence 
alignments - a web resource, online tools, and lessons learned from analysis of four mammalian SCL loci". Genome Research. 14: 313-318.

Re-di
more»

/BioPerl-Run-1.006900/Changes

$Id$
Revision history for bioperl-run modules

Full details of changes between all versions are available online at:
http://www.bioperl.org/wiki/Change_log

1.6.900

* Bowtie and BWA wrappers for NGS [maj, Ben Bimber, Dan Kortschak]
* ClustalW v2 support [cjfields]
* tRNAscanSE support [Mark Johnson, cjfields]
* Glimmer v2 updates [Mark Johnson, cjfields]
* PAML codeml wrapper updated to work with
more»

/BioPerl-Run-1.006900/AUTHORS

=head1 CONTRIBUTORS TO BIOPERL-RUN

=over

=item * Sendu Bala <bix at sendu.me.uk>

=item * Jer-Ming
more»

/BioPerl-Run-1.006900/LICENSE

BioPerl is licensed under the same terms as Perl itself, which means it is
dually-licensed under eit
more»

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