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bwa_0.5.8c.orig.tar.bz2

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/bwa-0.5.8c/NEWS

Beta Release 0.5.8 (8 June, 2010)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Notable changes in bwasw:

 * Fixed an issue of missing alignments. This should happen rarely and
   only when the contig/read alignment is multi-part. Very rarely, bwasw
   may still miss a segment in a multi-part alignment. This is difficult
   to fix, although possible.

Notable changes in bwa-short:

 * Discard the SW alignme
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/bwa-0.5.8c/ChangeLog

------------------------------------------------------------------------
r1536 | lh3 | 2010-10-16 23:35:10 -0400 (Sat, 16 Oct 2010) | 3 lines
Changed paths:
   M /branches/prog/bwa/bwape.c
   M /branches/prog/bwa/main.c
   M /branches/prog/bwa/stdaln.c

 * fixed a bug in the scoring matrix
 * release bwa-0.5.8c (r1536)

------------------------------------------------------------------------
r1451
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/bwa-0.5.8c/COPYING

                    GNU GENERAL PUBLIC LICENSE
                       Version 3, 29 June 2007

 Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
 Everyone is permitted to copy and distribute verbatim copies
 of this license document, but changing it is not allowed.

                            Preamble

  The GNU General Public License is a free, copyleft license for
software an
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