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How to compile? 1. Compile without multi-threading support: make 2. Compile with multi-threading support: make openmp=yes For more information, please read the cd-hit-users-guide.pdf.
CD-HIT ChangeLog CD-HIT-V4.6 (2011-04-25): Add: better auto tuning (for -M 0) of word table size for both single and multiple threaded execution; Fix: a minor bug for very long input sequences; Add: compiling option to change MAX_SEQ. CD-HIT-V4.5.8 (2011-03-24): Add: handling of asterisk at the end of sequences; Add: a few minor improvements in the parallelization; Add: new options -mask and -b more»
GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most softwa more»