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ensembl_63.orig.tar.gz

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Filename:ensembl_63.orig.tar.gz

/ensembl-63/cbuild/README.txt

Do not commit anything here. It is needed for rendering of BAM files; content
being added the first time these are rendered.

/ensembl-63/ensembl-compara/docs/README-stable_id_mapping

ABOUT
~~~~~

This document describes the procedure to map stable_ids in the
ensembl-compara pipeline.

It is used in the following mappings:

- EnsemblCompara GeneTrees 
  - stable_ids from release to release (ENSGT005600123456)
  - GeneTrees to external Treefam families

- EnsemblCompara MCL Families
  - stable_ids from release to release (ENSFM0056000123456)

The mapping procedure is based on th
more»

/ensembl-63/ensembl-compara/docs/README.ncrna_trees.dumps

Compara.{release}.ncrna_trees.nh.emf.gz 
  contains the tree for every ncrna_tree in Newick (New Hampshire) format

Compara.{release}.ncrna_trees.nhx.emf.gz 
  contains the tree for every ncrna_tree in New Hampshire Extended (NHX) format with:
  [D] duplication tag -- Y or N
  [G] gene stable_id
  [T] NCBI taxon_id

Compara.{release}.ncrna_trees.aln.emf.gz 
  contains the peptide alignme
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/ensembl-63/ensembl-compara/docs/README.protein_trees.dumps

Compara.{release}.gene_trees.nh.emf.gz 
  contains the tree for every protein_tree in Newick (New H
more»

/ensembl-63/ensembl-compara/modules/Bio/EnsEMBL/Compara/Production/DBSQL/README

This directory is for any production specific adaptors
or for subclasses of base compara adaptors.  
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/ensembl-63/ensembl-compara/modules/Bio/EnsEMBL/Compara/RunnableDB/DumpMultiAlign/README.emf

#### README ####

IMPORTANT: Please note you can download correlation data tables,
supported by Ense
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/ensembl-63/ensembl-compara/modules/Bio/EnsEMBL/Compara/RunnableDB/DumpMultiAlign/Readme.pm

=head1 LICENSE

  Copyright (c) 1999-2010 The European Bioinformatics Institute and
  Genome Researc
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/ensembl-63/ensembl-compara/modules/t/README

This directory contains a set of tests for the EnsEMBL Compara API
modules. The test-genome-DBs.zip
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