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/gbrowse-2.48~dfsg.orig/README

GBROWSE README

The Generic Genome Browser (GBrowse) is a simple but highly
configurable web-based genome browser.  It is a component of the
Generic Model Organism Systems Database project (GMOD).

******* DOWNLOADING ******

The 2.X versions are now considered stable. You may download it from
CPAN at http://search.cpan.org/~lds/GBrowse/ or get the developer's
version via SVN:

Checkout read-only

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/gbrowse-2.48~dfsg.orig/README.IF.GBROWSE.ISNT.WORKING

If you got an svn checkout of GBrowse and it isn't working, it is probably 
because you checked out from the svn HEAD, which is the main development 
branch.  Unfortunately, that branch is often unstable due to some 
major reworking which will make GBrowse much better.  In the mean time
(that is, until this README disappears), please check out from the
stable branch.  You can use almost the same s
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/gbrowse-2.48~dfsg.orig/README.fedora_and_selinux

If you have SELinux installed, typically as part of Fedora Core 3 or
higher, then you may experience difficulties getting GBrowse to work.

The default security parameters for SELinux prevent GBrowse from
performing some fundamental tasks, including reading its configuration
file in $CONF/GBrowse.conf (where $CONF is typically /etc/httpd/conf
or /usr/local/apache/conf). The symptom of the problem 
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/gbrowse-2.48~dfsg.orig/README.gff3

GFF3 is the successor to the GFF2 feature file format. Its main
advantage is that it uses the Sequen
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/gbrowse-2.48~dfsg.orig/docs/README.AWS

GBrowse Amazon EC2 Image -- Early documentation

The development version of GBrowse is located on th
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/gbrowse-2.48~dfsg.orig/docs/README.tutorial

After installation, the tutorial will be installed on your system's web
site under http://your.site/
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/gbrowse-2.48~dfsg.orig/docs/developer_notes/README.rearchitecture

This document describes the desired architecture for GBrowse version 2.0.

1) CGI Scripts:

gbrowse 
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/gbrowse-2.48~dfsg.orig/docs/developer_notes/README.sharing_tracks

14 June 2009

Notes on what needs to be done at the user interface level to share
tracks properly.


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