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last-align_199.orig.tar.gz

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/last-199/README.txt

LAST: Genome-Scale Sequence Comparison
======================================

LAST finds similar regions between sequences, and aligns them.  LAST
is similar to BLAST, but it copes better with giga-scale biological
sequences.  It can also use sequence quality data, and it can indicate
the ambiguity of each column in an alignment.

Requirements
------------

To handle mammalian genomes, it's best 
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/last-199/doc/FAQ.txt

Q: Is there a multi-core / multi-threaded version of LAST?

A: No, but you can easily do it yourself.  Suppose you want to compare
   sequences in three files (dna1.fa, dna2.fa, dna3.fa) to a lastdb
   database called "mydb".  You can do something like this:

     lastal mydb dna1.fa > out1.maf &
     lastal mydb dna2.fa > out2.maf &
     lastal mydb dna3.fa > out3.maf &

  This will process the f
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/last-199/ChangeLog.txt

------------------------------------------------------------------------
r199 | martin | 2012-05-07 17:23:51 +0900 (Mon, 07 May 2012) | 1 line

Improved the makefile.
------------------------------------------------------------------------
r198 | martin | 2012-03-30 14:06:38 +0900 (Fri, 30 Mar 2012) | 1 line

Turned compile warnings off in the top makefile, on in the src makefile.
----------------
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/last-199/COPYING.txt

                    GNU GENERAL PUBLIC LICENSE
                       Version 3, 29 June 2007

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