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libbio-graphics-perl_2.11.orig.tar.gz

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/Bio-Graphics-2.11/README

Bio::Graphics - Generate GD images of Bio::Seq objects

SYNOPSIS

This is a simple GD-based renderer (diagram drawer) for DNA and
protein sequences.  It is used from Perl like this:

  use Bio::Graphics;
  use Bio::DB::BioFetch;  # or some other Bio::SeqI generator
  # get a Bio::SeqI object somehow
  my $bf     = Bio::DB::BioFetch->new;
  my $cosmid = $bf->getSeq_by_id('CEF58D5');

  my @features
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/Bio-Graphics-2.11/README.bioperl

Bio::Graphics requires BioPerl version 1.6 ($VERSION 1.006 or higher),
which is expected to be released by the end of 2008. Until then, you
should use the version of Bio::Graphics that is in the current (1.5 or
lower) version of BioPerl.


/Bio-Graphics-2.11/Changes

Revision history for Perl extension Bio::Graphics.

2.11 Tue Jun 29 15:37:03 EDT 2010
     - Cleaned up stylesheet-based rendering of features when the main glyph has a type of
     "hat" and subfeatures overlap with each other.  This occurred when rendering certain
     DAS sources.

2.10 Mon May 24 13:58:26 PDT 2010
     - Fixed a long-standing but rarely-seen bug in layout algorithm that
      
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