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libbio-samtools-perl_1.36.orig.tar.gz

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Filename:libbio-samtools-perl_1.36.orig.tar.gz

/Bio-SamTools-1.36/README

This is a Perl interface to the SAMtools sequence alignment interface.
See http://samtools.sourceforge.net/.

To compile this module, you must first download, unpack and compile
SAMtools 0.1.4 or higher in some accessible directory. FOR SAMTOOLS
VERSION 0.1.4, YOU MUST RUN "make -f makefile.generic" IN THE
DISTRIBUTION DIRECTORY IN ORDER TO CREATE THE REQUIRED libbam.a
LIBRARY FILE. For other vers
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/Bio-SamTools-1.36/Changes

Version 1.36
   * Added C binary bam2bedgraph for quick coverage calculations (2-5x faster
     than BEDTools' genomeCoverageBed)
   * Speed up bamToGrowse.pl using bam2bedgraph.

Version 1.35
   * Add patch from John Marshall to fix several problems in the tam line generator
     when reads are unmapped.

Version 1.34
   * Add patch from Florian Finkernagel to accomodate paired end data that are

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/Bio-SamTools-1.36/LICENSE

a) the GNU General Public License as published by the Free
   Software Foundation; either version 1, or (at your option) any
   later version, or
b) the "Artistic License 2.0"

----------------------------------------------------------------------------

The General Public License (GPL)
Version 2, June 1991

Copyright (C) 1989, 1991 Free Software Foundation, Inc. 675 Mass Ave,
Cambridge, MA 02139,
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