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r-cran-genetics_1.3.6.orig.tar.gz

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Filename:r-cran-genetics_1.3.6.orig.tar.gz

/genetics/NEWS

genetics 1.3.6 - 2011-02-01
---------------------------

- Add missing 'locus<-', 'gene<-', and 'marker<-' functions to
  NAMESPACE file.

- Update Greg's email address to greg@warnes.net


genetics 1.3.5 - 2011-01-17
---------------------------

- Fix warning messages from R CMD check


genetics 1.3.4 - 2008-08-20
---------------------------

- Fix bug in makeGenotypes that caused it to ignore th
more»

/genetics/ChangeLog

2011-02-02 02:24  warnes

	* doc/genetics_article.pdf:
	  update
	  Greg's
	  email

2011-02-02 02:23  warnes

	* doc/genetics_article.pdf,
	  doc/genetics_article.tex:
	  update
	  Greg's
	  email

2011-01-17 19:13  warnes

	* trunk/genetics/DESCRIPTION,
	  NEWS,
	  trunk/genetics/man/HWE.chisq.Rd,
	  trunk/genetics/man/HWE.test.Rd,
	  trunk/genetics/man/diseq.Rd:
	  Correct
	  R
	  CMD
	  check

more»

/genetics/TODO

TO DO:
======

(In no particular order)

- provide HTML linkage disequilibrium table

- consider enhancing LD tables with HWE on diagonal, potentially use
  lower trangular are to colorie on a second veriabe, e.g. p-value on
  top, D' on the bottom.

- create LD.haplotype function.

- chromosome, chromosome.map

- Transmission/Disequilibrium Test

- interface to genehunter

- Haplotype estimation 
more»

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