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seqan_1.2.orig.tar.gz

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Filename:seqan_1.2.orig.tar.gz

/seqan-1.2/README

This is SeqAn, the C++ template library for sequence analysis

See http://www.seqan.de for more information

Read "docs/Page_Installation.html" for detailed installation instructions.


Folders:
========

"apps":  SeqAn applications
"cmake": CMake files to create your own project files
"demos": SeqAn demos, see also "docs/INDEXPAGE_Demo.html"
"docs":  HTML-Documentation
"seqan": SeqA
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/seqan-1.2/apps/dfi/README

DFI - The Deferred Frequency Index

This package contains the implementation of the DFI algorithm 
published in "Efficient string mining under constraints via the 
deferred frequency index".

There are executables compiled for various platforms:
  dfi_windows.exe  dfi for Windows
  dfi_linux        dfi for GNU Linux x86
  dfi_linux64      dfi for GNU Linux x86-64
  dfi_darwin       dfi for Mac OS 
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/seqan-1.2/apps/micro_razers/README

*** MicroRazerS - Rapid Alignment of Small RNA Reads ***
http://www.seqan.de/projects/microRazers.html

---------------------------------------------------------------------------
Table of Contents
---------------------------------------------------------------------------
  1.   Overview
  2.   Installation
  3.   Usage
  4.   Output Format
  5.   Contact

----------------------------------------
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/seqan-1.2/apps/razers/README

*** RazerS - Fast Read Mapping with Sensitivity Control ***
http://www.seqan.de/projects/razers.html
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/seqan-1.2/apps/seqan_tcoffee/README

*************************************************
* Multiple sequence alignment - SeqAn::T-Coffee *

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/seqan-1.2/COPYING

                    GNU GENERAL PUBLIC LICENSE
                       Version 3, 29 June 2007

 C
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/seqan-1.2/COPYING.LESSER

		   GNU LESSER GENERAL PUBLIC LICENSE
                       Version 3, 29 June 2007

 Copyright
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