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sift_4.0.3b.orig.tar.gz

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Filename:sift_4.0.3b.orig.tar.gz

/sift4.0.3b/README

SIFT

I.	INSTALLATION

	A.	Getting the executables
		In bin/ , there are two folders, one named "linux" and one
		named "solaris".
		Go to the folder that corresponds to your desktop environment
		('cd solaris' or 'cd linux') and type:
 
		mv * ..
 
		This moves all executables in the solaris (linux) folder to
		the parent directory, so that all of the executables are now
		in sift/bin/
 
		If you
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/sift4.0.3b/README_4.0.3

SIFT 4.0 includes three new tools to enable exome-wide analysis of single nucleotide variants and indels.

SIFT_exome_nssnvs.pl
SIFT_exome_indels.pl
SNPClassifier

(for SNPClassifier, see the documentation in bin/SNPClassifier/ directory)

1. SIFT_exome_nssnvs.pl script takes as input, a list of multiple chromosome coordinates of coding
single nucleotide variants and outputs variant annotation alo
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/sift4.0.3b/bin/solaris/README

Compiled under Solaris 2.6 with SUN's cc compiler:
SunOS 5.6 sun4u sparc SUNW,Ultra-250

/sift4.0.3b/blimps/README

BLIMPS (BLocks IMProved Searcher)
(C) Copyright 1993-1999, Fred Hutchinson Cancer Research Center

R
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/sift4.0.3b/src/README

Need to compile these six SIFT programs with an ANSI C compiler:

choose_seqs_via_psiblastseedmedian
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/sift4.0.3b/web/README

# These programs and scripts compose the website at sift.jcvi.org
# If you would like to install you
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/sift4.0.3b/web/www/readme_collated_predictions_dbSNP.txt

Column Definitions for collated_predictions_dbSNP.tsv

Please note: Columns 4 thru 17 represent resu
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/sift4.0.3b/web/blocks/thanks.html

<HTML>
<TITLE>BLOCKS WWW Server Thanks</title>
<H1 ALIGN=CENTER><IMG ALIGN=MIDDLE SRC="/blocks/icons
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