Filewatcher File Search File Search
Catalog
Content Search
» » » »

squizz_0.99a.orig.tar.gz

Homepage:-
Package version:-
Architecture:-
Distribution:Debian
Filename:squizz_0.99a.orig.tar.gz

/squizz-0.99a/README

SQUIZZ

Squizz is a sequence/alignment format checker, but it has some
conversion capabilities too.

Most common sequence and alignment formats are supported :

- EMBL, FASTA, GCG, GDE, GENBANK, IG, NBRF, PIR (codata), RAW, and
  SWISSPROT.
- CLUSTAL, FASTA, MEGA, MSF, NEXUS, PHYLIP (interleaved and sequential) and
  STOCKHOLM.

Any remark/suggestion/problem should be reported to the current
maint
more»

/squizz-0.99a/NEWS

What's new in 1.00:

* GENBANK:
  - Add support for RefSeq DBLINK keyword.
* MEGA:
  - Support old statement formatted title lines.
  - Handle identical character `.' in sequences.
* NEXUS:
  - Allow sequence names with spaces.
* RAW:
  - Allow gaps in sequence (mostly for consistency with other formats).
* SWISSPROT:
  - Add support for UniProtKB release 14.0 DE line.

* All alignmnent formats co
more»

/squizz-0.99a/ChangeLog

2010-12-13  Nicolas Joly  <njoly@pasteur.fr>

	* lib/align/nexusil.l: Recognize `charstatelabels' as a valid
	NEXUS command.

	* lib/align/nexusil.l: Support tab characters just like plain
	spaces in commands.

	* lib/align/megal.l: Do correctly handle sequence names that start
	with `mega' string.
	* test/mega.sh: Exercize it.

2010-09-15  Nicolas Joly  <njoly@pasteur.fr>

	* lib/sequence/embl*.[
more»

/squizz-0.99a/TODO

PROGRAMS & LIBRARIES :

* Check all output functions results (printf, putc, ...).
* Load aa weights
more»

/squizz-0.99a/AUTHORS

Squizz was written, and is currently maintained by :

Nicolas Joly		<njoly@pasteur.fr>


/squizz-0.99a/COPYING

		    GNU GENERAL PUBLIC LICENSE
		       Version 2, June 1991

 Copyright (C) 1989, 1991 Free Softw
more»

Browse inside squizz_0.99a.orig.tar.gz

         [DIR]squizz-0.99a/ (27)

Download squizz_0.99a.orig.tar.gz

Results 1 - 1 of 1
Help - FTP Sites List - Software Dir.
Search over 15 billion files
© 1997-2016 FileWatcher.com