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tree-puzzle-doc

Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the documentation package for tree-puzzle

Homepage:
Package version:5.2-7
Architecture:all
Distribution:Debian
Filename:tree-puzzle-doc_5.2-7_all.deb

/usr/share/doc/tree-puzzle-doc/changelog.Debian.gz

tree-puzzle (5.2-7) unstable; urgency=low

  * debian/control:
    - Standards-Version: 3.9.2 (no changes needed)
    - Fixed Vcs fields
    - Do not Build-Depend cdbs, quilt any more
  * Debhelper 8 (control + compat)
  * debian/source/format: 3.0 (quilt)
  * debian/rules: short dh
  * removed debian/README.source which becomes superfluous by using
    source format 3.0 (quilt)
  * debian/*.docs:
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/usr/share/doc/tree-puzzle-doc/changelog.gz

ChangeLog

($Id$)

Version  date		what has been changed

TODO:
	missing quartet handling
	missing quartet counting in parallel case
DONE:

5.2       14.07.2004    - Version 5.2 !!!

NEW RELEASE
===========

5.2.rc17  14.07.2004    - Manual sources moved out of the package
			- numerous changes in the manual

5.2.rc16  12.07.2004    - Makefile.am: double distclean rule removed
			- fflush added bef
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/usr/share/doc/tree-puzzle-doc/copyright

This package was debianized by  -- Andreas Tille <tille@debian.org> on
Mon,  5 Nov 2001 11:00:04 +0100

It was downloaded from http://www.tree-puzzle.de

Upstream Authors: Korbinian Strimmer <korbinian.strimmer@zoo.ox.ac.uk> 
   and Arndt von Haeseler <haeseler@eva.mpg.de>.   

Copyright 1995-1999 by Korbinian Strimmer and Arndt von Haeseler
Copyright 1999-2003 by Heiko A. Schmidt, Korbinian Strim
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