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r-cran-genetics

GNU R package for population genetics

Classes and methods for handling genetic data. Includes The package provides a library for the statistics environment R that contains classes to represent genotypes and haplotypes at single markers up to multiple markers on multiple chromosomes. Function include allele frequencies, flagging homo/heterozygotes, flagging carriers of certain alleles, estimating and testing for Hardy-Weinberg disequilibrium, estimating and testing for linkage disequilibrium, and more.

NOTE: THIS PACKAGE IS NOW OBSOLETE.

The R-Genetics project has developed an set of enhanced genetics packages to replace 'genetics'. Please visit the project homepage at http://rgenetics.org for information.

Homepage:
Package version:1.3.6-2
Architecture:all
Distribution:Debian
Filename:r-cran-genetics_1.3.6-2_all.deb

/usr/lib/R/site-library/genetics/NEWS

genetics 1.3.6 - 2011-02-01
---------------------------

- Add missing 'locus<-', 'gene<-', and 'marker<-' functions to
  NAMESPACE file.

- Update Greg's email address to greg@warnes.net


genetics 1.3.5 - 2011-01-17
---------------------------

- Fix warning messages from R CMD check


genetics 1.3.4 - 2008-08-20
---------------------------

- Fix bug in makeGenotypes that caused it to ignore th
more»

/usr/lib/R/site-library/genetics/ChangeLog

2011-02-02 02:24  warnes

	* doc/genetics_article.pdf:
	  update
	  Greg's
	  email

2011-02-02 02:23  warnes

	* doc/genetics_article.pdf,
	  doc/genetics_article.tex:
	  update
	  Greg's
	  email

2011-01-17 19:13  warnes

	* trunk/genetics/DESCRIPTION,
	  NEWS,
	  trunk/genetics/man/HWE.chisq.Rd,
	  trunk/genetics/man/HWE.test.Rd,
	  trunk/genetics/man/diseq.Rd:
	  Correct
	  R
	  CMD
	  check

more»

/usr/share/doc/r-cran-genetics/changelog.Debian.gz

r-cran-genetics (1.3.6-2) unstable; urgency=low

  * debian/control:
    - (Build-)Depend on r-cran-mass, which provides r-cran-vr (LP: #755951).
    - Corrected VCS URLs.
    - Using Debhelper 8 (debian/compat)
    - Incremented Standards-Version to reflect conformance with Policy 3.9.2
      (no changes needed).
  * Formatted debian/copyright to machine-readable DEP-5 format.
  * Install tests i
more»

/usr/share/doc/r-cran-genetics/TODO

TO DO:
======

(In no particular order)

- provide HTML linkage disequilibrium table

- consider enh
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/usr/share/doc/r-cran-genetics/copyright

Format: http://dep.debian.net/deps/dep5/
Source: http://cran.r-project.org/src/contrib/genetics_1.3.
more»

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