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GNU R package for biological structure analysis

The bio3d package contains utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform atom summaries, atom selection, re-orientation, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, and principal component analysis (PCA). In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data.
Package version:1.0-8-1


... and I always thought that R would not be good for protein structure
analysis. This fine work has completely escaped my routine scanning,
albeit being properly published in bioinformatics. Let this Debian
packaging help its dissemination a bit.

When using the package, please cite

	 Bio3D: An R package for the comparative analysis of protein
	 structures.  Grant, Rodrigues, ElSawy, McCammon, C


r-other-bio3d (1.0-8-1) unstable; urgency=low

  * New upstream release (Closes: #577386). 
  * Added a tilde to the R:Depends substvar to also accept pre-release
    versions (debian/rules).
  * Allow upload by Debian Maintainers (debian/control).
  * Suggests r-cran-bigmemory, that is not yet available (debian/control).

 -- Charles Plessy <>  Tue, 13 Apr 2010 08:19:29 +0900



Name      :  Bio3D
Contact   :  Barry Grant <>
Source    :

Copyright :  Barry Grant <>
License   :  GPL-2+
    This program is free software; you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation; 

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