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libbio-graphics-perl

Generate GD images of Bio::Seq objects

Variants:
The Bio::Graphics::Panel class provides drawing and formatting services for any object that implements the Bio::SeqFeatureI interface, including Ace::Sequence::Feature, Das::Segment::Feature and Bio::DB::Graphics objects. It can be used to draw sequence annotations, physical (contig) maps, protein domains, or any other type of map in which a set of discrete ranges need to be laid out on the number line.
Homepage:
Package version:2.11-1
Architecture:all
Distribution:Debian
Filename:libbio-graphics-perl_2.11-1_all.deb

/usr/share/doc/libbio-graphics-perl/README.Debian

Notes on how this package is tested.
────────────────────────────────────

The maintainer relies on the package's regression tests that are executed at
build time on his computer.

In the future, build logs for this package will be published in the Debian
website so that you can inspect the results…

 -- Charles Plessy <ples
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/usr/share/doc/libbio-graphics-perl/README.gz

Bio::Graphics - Generate GD images of Bio::Seq objects

SYNOPSIS

This is a simple GD-based renderer (diagram drawer) for DNA and
protein sequences.  It is used from Perl like this:

  use Bio::Graphics;
  use Bio::DB::BioFetch;  # or some other Bio::SeqI generator
  # get a Bio::SeqI object somehow
  my $bf     = Bio::DB::BioFetch->new;
  my $cosmid = $bf->getSeq_by_id('CEF58D5');

  my @features
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/usr/share/man/man1/contig_draw.pl.1p.gz

CONTIG_DRAW(1p)  User Contributed Perl Documentation CONTIG_DRAW(1p)



NAME
       search_overview -- Render a SearchIO parser report into a
       simple overview graphic

SYNOPSIS
       search_overview -i filename [-f format] [-o outputfilename]
       [--labels]

DESCRIPTION
       This script will take any Bio::SearchIO parseable report and
       turn it into a simple overview graphic of th
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/usr/share/man/man1/feature_draw.pl.1p.gz

FEATURE_DRAW(1p) User Contributed Perl DocumentationFEATURE_DRAW(1p)



NAME
       feature_draw.pl 
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/usr/share/man/man1/frend.pl.1p.gz

FREND(1p)        User Contributed Perl Documentation       FREND(1p)



NAME
       frend.pl -- Rend
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/usr/share/man/man1/search_overview.pl.1p.gz

SEARCH_OVERVIEW(1User Contributed Perl DocumentatSEARCH_OVERVIEW(1p)



NAME
       search_overview 
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/usr/share/man/man3/Bio::Graphics.3pm.gz

Bio::Graphics(3pmUser Contributed Perl DocumentatiBio::Graphics(3pm)



NAME
       Bio::Graphics - 
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/usr/share/man/man3/Bio::Graphics::ConfiguratorI.3pm.gz

Bio::Graphics::CoUseruContributed PBio::Graphics::ConfiguratorI(3pm)



NAME
       Bio::Graphics::C
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