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libbio-graphics-perl

Generate GD images of Bio::Seq objects

Variants:
The Bio::Graphics::Panel class provides drawing and formatting services for any object that implements the Bio::SeqFeatureI interface, including Ace::Sequence::Feature, Das::Segment::Feature and Bio::DB::Graphics objects. It can be used to draw sequence annotations, physical (contig) maps, protein domains, or any other type of map in which a set of discrete ranges need to be laid out on the number line.
Homepage:
Package version:2.26-1
Architecture:all
Distribution:Debian
Filename:libbio-graphics-perl_2.26-1_all.deb

/usr/share/doc/libbio-graphics-perl/README.gz

Bio::Graphics - Generate GD images of Bio::Seq objects

SYNOPSIS

This is a simple GD-based renderer (diagram drawer) for DNA and
protein sequences.  It is used from Perl like this:

  use Bio::Graphics;
  use Bio::DB::BioFetch;  # or some other Bio::SeqI generator
  # get a Bio::SeqI object somehow
  my $bf     = Bio::DB::BioFetch->new;
  my $cosmid = $bf->get_Seq_by_id('CEF58D5');

  my @feature
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/usr/share/doc/libbio-graphics-perl/README.test

Notes on how this package is tested.
────────────────────────────────────

The maintainer relies on the package's regression tests that are executed at
build time on his computer.

The build logs are stored in a Git repository and can be browsed on line.

http://git.debian.org/?p=debian-med/libbio-graphics-perl.git;a=blob;hb=r
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/usr/share/man/man1/contig_draw.pl.1p.gz

CONTIG_DRAW(1p)  User Contributed Perl Documentation CONTIG_DRAW(1p)



NAME
       search_overview -- Render a SearchIO parser report into a
       simple overview graphic

SYNOPSIS
       search_overview -i filename [-f format] [-o outputfilename]
       [--labels]

DESCRIPTION
       This script will take any Bio::SearchIO parseable report and
       turn it into a simple overview graphic of th
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/usr/share/man/man1/feature_draw.pl.1p.gz

FEATURE_DRAW(1p) User Contributed Perl DocumentationFEATURE_DRAW(1p)



NAME
       feature_draw.pl 
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/usr/share/man/man1/frend.pl.1p.gz

FREND(1p)        User Contributed Perl Documentation       FREND(1p)



NAME
       frend.pl -- Rend
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/usr/share/man/man1/search_overview.pl.1p.gz

SEARCH_OVERVIEW(1User Contributed Perl DocumentatSEARCH_OVERVIEW(1p)



NAME
       search_overview 
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/usr/share/man/man3/Bio::Graphics.3pm.gz

Bio::Graphics(3pmUser Contributed Perl DocumentatiBio::Graphics(3pm)



NAME
       Bio::Graphics - 
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/usr/share/man/man3/Bio::Graphics::ConfiguratorI.3pm.gz

Bio::Graphics::CoUseruContributed PBio::Graphics::ConfiguratorI(3pm)



NAME
       Bio::Graphics::C
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