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libbio-perl-perl

BioPerl core perl modules

BioPerl is a toolkit of perl modules useful in building bioinformatics solutions in Perl. It is built in an object-oriented manner so that many modules depend on each other to achieve a task. The collection of modules in libbio-perl-perl consist of the core of the functionality of bioperl.
Homepage:
Package version:1.6.901-3
Architecture:all
Distribution:Debian
Filename:libbio-perl-perl_1.6.901-3_all.deb

/usr/share/man/man3/Bio::Align::AlignI.3pm.gz

Bio::Align::AlignUsermContributed Perl DocumeBio::Align::AlignI(3pm)



NAME
       Bio::Align::AlignI - An interface for describing sequence
       alignments.

SYNOPSIS
         # get a Bio::Align::AlignI somehow - typically using Bio::AlignIO system
         # some descriptors
         print $aln->length, "\n";
         print $aln->num_residues, "\n";
         print $aln->is_flush, "\n";
      
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/usr/share/man/man3/Bio::Align::DNAStatistics.3pm.gz

Bio::Align::DNAStUsertContributed PerlBio::Align::DNAStatistics(3pm)



NAME
       Bio::Align::DNAStatistics - Calculate some statistics for a
       DNA alignment

SYNOPSIS
         use Bio::AlignIO;
         use Bio::Align::DNAStatistics;

         my $stats = Bio::Align::DNAStatistics->new();
         my $alignin = Bio::AlignIO->new(-format => 'emboss',
                                        
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/usr/share/man/man3/Bio::Align::Graphics.3pm.gz

Bio::Align::GraphUser3Contributed Perl DocuBio::Align::Graphics(3pm)



NAME
       Bio::Align::Graphics - Graphic Rendering of
       Bio::Align::AlignI Objects

SYNOPSIS
         use Bio::Align::Graphics;

         #Get an AlignI object, usually by using Bio::AlignIO

         my $file=shift @ARGV;
         my $in=new Bio::AlignIO(-file=>$file, -format=>'clustalw');
         my $aln=$in->next_al
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/usr/share/man/man3/Bio::Align::PairwiseStatistics.3pm.gz

Bio::Align::PairwUsertContributedBio::Align::PairwiseStatistics(3pm)



NAME
       Bio::Align::Pair
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/usr/share/man/man3/Bio::Align::ProteinStatistics.3pm.gz

Bio::Align::ProteUseraContributed)Bio::Align::ProteinStatistics(3pm)



NAME
       Bio::Align::Prot
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/usr/share/man/man3/Bio::Align::StatisticsI.3pm.gz

Bio::Align::StatiUsersContributed Perl DBio::Align::StatisticsI(3pm)



NAME
       Bio::Align::Stat
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/usr/share/man/man3/Bio::Align::Utilities.3pm.gz

Bio::Align::UtiliUser(Contributed Perl DocBio::Align::Utilities(3pm)



NAME
       Bio::Align::Util
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/usr/share/man/man3/Bio::AlignIO.3pm.gz

Bio::AlignIO(3pm)User Contributed Perl DocumentatioBio::AlignIO(3pm)



NAME
       Bio::AlignIO - H
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