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libbio-perl-run-perl

BioPerl wrappers: modules

Contains modules that provide a Perl interface to various bioinformatics applications to allow them to be used with common BioPerl objects.
Homepage:
Package version:1.6.9-1
Architecture:all
Distribution:Debian
Filename:libbio-perl-run-perl_1.6.9-1_all.deb

/usr/share/man/man3/Bio::DB::ESoap.3pm.gz

Bio::DB::ESoap(3pUser Contributed Perl DocumentatBio::DB::ESoap(3pm)



NAME
       Bio::DB::ESoap - Client for the NCBI Entrez EUtilities SOAP
       server

SYNOPSIS
        $fac = Bio::DB::ESoap->new( -util => 'esearch' );
        $som = $fac->run( -db => 'prot', -term => 'HIV and gp120' );
        $fac->set_parameters( -term => 'HIV2 and gp160' );
        # accessors corresponding to valid par
more»

/usr/share/man/man3/Bio::DB::ESoap::WSDL.3pm.gz

Bio::DB::ESoap::WUser3Contributed Perl DocuBio::DB::ESoap::WSDL(3pm)



NAME
       Bio::DB::ESoap::WSDL - WSDL parsing for Entrez SOAP
       EUtilities

SYNOPSIS
       Used by Bio::DB::ESoap

        # url
        $wsdl = Bio::DB::ESoap::WSDL->new(
           -url => "http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/v2.0/eutils.wsdl"
         );
        # local copy
        $wsdl = Bio::DB::ESoap
more»

/usr/share/man/man3/Bio::DB::SoapEUtilities.3pm.gz

Bio::DB::SoapEUtiUsereContributed Perl DBio::DB::SoapEUtilities(3pm)



NAME
       Bio::DB::SoapEUtilities - Interface to the NCBI Entrez web
       service *BETA*

SYNOPSIS
        use Bio::DB::SoapEUtilities;

        # factory construction

        my $fac = Bio::DB::SoapEUtilities->new()

        # executing a utility call

        #get an iteratable adaptor
        my $links = $fac->elink(
 
more»

/usr/share/man/man3/Bio::DB::SoapEUtilities::DocSumAdaptor.3pm.gz

Bio::DB::SoapEUtiUsereConBio::DB::SoapEUtilities::DocSumAdaptor(3pm)



NAME
       Bio::DB::SoapEUt
more»

/usr/share/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor.3pm.gz

Bio::DB::SoapEUtiUsereContBio::DB::SoapEUtilities::FetchAdaptor(3pm)



NAME
       Bio::DB::SoapEUt
more»

/usr/share/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor::seq.3pm.gz

Bio::DB::SoapEUtiUserBio::DB::SoapEUtilities::FetchAdaptor::seq(3pm)



NAME
       Bio::DB::SoapEUt
more»

/usr/share/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor::species.3pm.gz

Bio::DB::SoapEUtiBio::DB::SoapEUtilities::FetchAdaptor::species(3pm)



NAME
       Bio::DB::SoapEUt
more»

/usr/share/man/man3/Bio::DB::SoapEUtilities::GQueryAdaptor.3pm.gz

Bio::DB::SoapEUtiUsereConBio::DB::SoapEUtilities::GQueryAdaptor(3pm)



NAME
       Bio::DB::SoapEUt
more»

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