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librg-utils-perl

parsers and format conversion utilities used by (e.g.) profphd

This package contributes to the PredictProtein server for the automated structural annotation of protein sequences. It features as series of conversion tools like:

* blast2saf.pl * blastpgp_to_saf.pl * conv_hssp2saf.pl * copf.pl * hssp_filter.pl * safFilterRed.pl

which are supported by the modules:

* RG:Utils::Conv_hssp2saf * RG:Utils::Copf * RG:Utils::Hssp_filter

Homepage:
Package version:1.0.43-1
Architecture:all
Distribution:Debian
Filename:librg-utils-perl_1.0.43-1_all.deb

/usr/share/doc/librg-utils-perl/README.Debian

librg-utils-perl for Debian
---------------------------

This package presents perl utilities that are used by predictors from the Rost
Lab, for example profphd.

 -- Laszlo Kajan <lkajan@rostlab.org>  Wed, 28 Sep 2011 11:18:39 +0200


/usr/share/man/man1/dbSwiss.1.gz

DBSWISS(1)                  User Commands                 DBSWISS(1)



NAME
       dbSwiss - create DBM version of Swiss-Prot data

SYNOPSIS
       /usr/share/librg-utils-perl/dbSwiss [OPTIONS]

       /usr/share/librg-utils-perl/dbSwiss --datadir /data/swissprot
       --infile /data/swissprot/uniprot_sprot.dat

       /usr/share/librg-utils-perl/dbSwiss [--help] [--man]

DESCRIPTION
       dbSw
more»

/usr/share/man/man3/RG::Utils::Conv_hssp2saf.3pm.gz

RG::Utils::Conv_hUsersContributed Perl RG::Utils::Conv_hssp2saf(3pm)



NAME
       RG::Utils::Conv_hssp2saf - Rost Lab perl utilities

SYNOPSIS
       use RG::Utils::Conv_hssp2saf;

FUNCTIONS
       See module source for description.

       bynumber
       bynumber_high2low
       conv_hssp2saf
       convHssp2saf
       convHssp2saf_hsspRdLoc
       errSbr
       errSbrMsg
       get_range
    
more»

/usr/share/man/man3/RG::Utils::Copf.3pm.gz

RG::Utils::Copf(3User Contributed Perl DocumentaRG::Utils::Copf(3pm)



NAME
       RG::Utils::Copf 
more»

/usr/share/man/man3/RG::Utils::Hssp_filter.3pm.gz

RG::Utils::Hssp_fUserrContributed Perl DoRG::Utils::Hssp_filter(3pm)



NAME
       RG::Utils::Hssp_
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/usr/share/doc/librg-utils-perl/changelog.Debian.gz

librg-utils-perl (1.0.43-1) unstable; urgency=low

  * New upstream release

 -- Laszlo Kajan <lkaja
more»

/usr/share/doc/librg-utils-perl/copyright

This package was debianized by Guy Yachdav <gyachdav@rostlab.org> on
Wed, 30 Dec 2009 12:28:46 +0100
more»

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