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libswiss-perl

Perl API to the UniProt database

UniProt, SwissProt and TrEMBL are different views on protein sequence data that is prepared by groups at the European Bioinformatics Institute (EMBL-EBI) in Cambridge and the Swiss Institute of Bioinformatics (SIB) in Geneva.

The SwissKnife Perl library is used by the developers of these databases to perform all the automated editing and sytax checks. The users of this package will profit from the stable API on an ever evolving representation of biological knowledge.

Homepage:
Package version:1.67-1
Architecture:all
Distribution:Debian
Filename:libswiss-perl_1.67-1_all.deb

/usr/share/doc/libswiss-perl/README

OVERVIEW
--------

Swissknife is a Perl module for creating and parsing Swiss-Prot files.


AVAILABILITY
------------

The latest version of Swissknife is available from:

   ftp://ftp.ebi.ac.uk/pub/software/swissprot/Swissknife/
   http://swissknife.sf.net/


INSTALLATION
------------

Use the following commands:

   gunzip Swissknife.tar.gz
   tar xf Swissknife.tar
   cd SWISS
   perl Makefile.P
more»

/usr/share/man/man3/SWISS::CCcopyright.3pm.gz

SWISS::CCcopyrighUsermContributed Perl DocumeSWISS::CCcopyright(3pm)



Name
       SWISS::CCcopyright

Description
       SWISS::CCcopyright represents the copyright statment within
       the comments block of a SWISS-PROT entry as specified in the
       user manual
        http://www.expasy.org/sprot/userman.html .   Collectively,
       comments of all types
        are stored within a SWISS:
more»

/usr/share/man/man3/SWISS::ACs.3pm.gz

SWISS::ACs(3pm)  User Contributed Perl Documentation SWISS::ACs(3pm)



Name
       SWISS::ACs

Description
       SWISS::ACs represents the AC (accession) lines within an
       SWISS-PROT + TrEMBL entry as specified in the user manual
       http://www.expasy.org/sprot/userman.html .

       The SWISS-PROT format has recently been changed to multiple
       AC lines.  This module will read

    
more»

/usr/share/man/man3/SWISS::BaseClass.3pm.gz

SWISS::BaseClass(User Contributed Perl DocumentSWISS::BaseClass(3pm)



NAME
       SWISS::BaseClass
more»

/usr/share/man/man3/SWISS::CC.3pm.gz

SWISS::CC(3pm)   User Contributed Perl Documentation  SWISS::CC(3pm)



Name
       SWISS::CC.pm

De
more»

/usr/share/man/man3/SWISS::CCalt_prod.3pm.gz

SWISS::CCalt_prodUser)Contributed Perl DocumenSWISS::CCalt_prod(3pm)



Name
       SWISS::CCalt_pro
more»

/usr/share/man/man3/SWISS::CCbpc_properties.3pm.gz

SWISS::CCbpc_propUsereContributed Perl DSWISS::CCbpc_properties(3pm)



Name
       SWISS::CCbpc_pro
more»

/usr/share/man/man3/SWISS::CCinteraction.3pm.gz

SWISS::CCinteractUser3Contributed Perl DocuSWISS::CCinteraction(3pm)



Name
       SWISS::CCinterac
more»

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