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bioperl-run

BioPerl wrappers: scripts

Variants:
Contains scripts from the BioPerl-Run package. This package will also install all wrappable applications packaged in Debian. The ones that are not Free are "Suggested" by this package.
Homepage:
Package version:1.6.9-1
Architecture:all
Distribution:Debian
Filename:bioperl-run_1.6.9-1_all.deb

/usr/share/doc/bioperl-run/README.Debian

bioperl-run for Debian
----------------------

(Extracted from the INSTALL file)

ENVIRONMENT VARIABLES

 Some important environment variables you need to be aware of.

 Variable               Values     Comment
 --------------------------------------------------------------------
 PHYLIPVERSION  3.5, 3.6   If you want to run Phylip3.6 you 
                           need to set this env variable 
more»

/usr/share/man/man1/bp_bioperl_application_installer.pl.1p.gz

BP_BIOPERL_APPLICUserNContributeBP_BIOPERL_APPLICATION_INSTALLER(1p)



NAME
       bioperl_application_installer - downloads and installs
       runnables

SYNOPSIS
       bioperl_application_installer

DESCRIPTION
       This script will ask the user which programs wants to install
       and where. It will download the packages, decompress them (if
       necessary) and compile/install them in 
more»

/usr/share/man/man1/bp_multi_hmmsearch.pl.1p.gz

BP_MULTI_HMMSEARCUser)Contributed Perl DocumenBP_MULTI_HMMSEARCH(1p)



NAME
       multi_hmmsearch - perform a hmmsearch into multiple FASTA
       files using
                         an INDEX file

SYNOPSIS
       multi_hmmsearch -p hmm_file [-i] -f index_file

DESCRIPTION
       Not technically a Bio::Tools::Run script as this doesn't use
       any Bioperl or Bioperl-run components but it's u
more»

/usr/share/man/man1/bp_panalysis.pl.1p.gz

BP_PANALYSIS(1p) User Contributed Perl DocumentationBP_PANALYSIS(1p)



NAME
       panalysis.PLS - 
more»

/usr/share/man/man1/bp_papplmaker.pl.1p.gz

BP_PAPPLMAKER(1p)User Contributed Perl DocumentatioBP_PAPPLMAKER(1p)



NAME
       papplmaker.PLS -
more»

/usr/share/man/man1/bp_run_neighbor.pl.1p.gz

BP_RUN_NEIGHBOR(1User Contributed Perl DocumentatBP_RUN_NEIGHBOR(1p)



NAME
       run_neighbor - r
more»

/usr/share/man/man1/bp_run_protdist.pl.1p.gz

BP_RUN_PROTDIST(1User Contributed Perl DocumentatBP_RUN_PROTDIST(1p)



NAME
       run_neighbor - r
more»

/usr/share/doc/bioperl-run/changelog.Debian.gz

bioperl-run (1.6.9-1) unstable; urgency=low

  * New upstream release. 
  * Converted and validated 
more»

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