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cain

simulations of chemical reactions

Variants:
Cain performs stochastic and deterministic simulations of chemical reactions. It can spawn multiple simulation processes to utilize multi-core computers. It stores models, methods, and simulation output (populations and reaction counts) in an XML format. In addition, SBML models can be imported and exported. The models and methods can be read from input files or edited within the program.

The GUI (Graphical User Interface) is written in Python and uses the wxPython toolkit. Most of the solvers are implemented as command line executables, written in C++, which are driven by Cain. This makes it easy to launch batch jobs. It also simplifies the process of adding new solvers. Cain offers a variety of solvers: * Gillespie's direct method. * Gillespie's first reaction method. * Gibson and Bruck's next reaction method. * Tau-leaping. * Hybrid direct/tau-leaping. * ODE integration.

This package provides the architecture independent files for cain

Homepage:
Package version:1.9-4
Architecture:all
Distribution:Debian
Filename:cain_1.9-4_all.deb

/usr/include/cain/loki/readme.txt

// $Id: readme.txt 753 2006-10-17 19:54:22Z syntheticpp $

The Golden Code
KEEPEN DER DAMDDEN FUGGERMUTTENS OTTEN DIS CODDEN FIL

A compliant C++ compiler will compile all of this code as is.
See the respective vendor directories for code that actually compiles & runs.

Note: Right now, this code contains CodeWarrior & gcc modifications, 
which may be removed at a future point in time 
(by moving 
more»

/usr/share/doc/cain/README.Debian

cain (1.9-2) unstable; urgency=low

  * For a minimal footprint of the cain package for the
    regular users, the following split into packages was
    decided:
    	cain (platform independent)
    	cain-examples (platform independent)
    	cain-solvers (compiled for every architecture)

  * The python module of cain does not have the character of a 
    a module that would be used as such by ext
more»

/usr/share/cain/help/Faq.htd

<html>
<head>
<title>FAQ</title>
</head>
<body>
<h1>FAQ</h1>

<p>
<b>Why is this program called Cain?</b><br>
I couldn't think of a Catchy And Informative Name.
</p>

<p>
<b>Where can I get the latest version of Cain?</b><br>
<a href="http://cain.sourceforge.net/">http://cain.sourceforge.net/</a>
</p>

<p>
<b>How can I cite Cain?</b>
Please cite reference [<a href="Bibliography.
more»

/usr/share/cain/help/Faq.htm

<html>
<head>
<title>FAQ</title>
</head>
<body>
<h1>FAQ</h1>

<p>
<b>Why is this program called Cai
more»

/usr/share/man/man1/cain.1.gz

cain(1)                                                      cain(1)



NAME
       cain  -  stochas
more»

/usr/share/doc/cain/changelog.Debian.gz

cain (1.9-4) unstable; urgency=low

  * debian/rules: Enable binary only builds
    Closes: #674235

more»

/usr/share/cain/help/ToDo.htd

<html>
<head>
<title>To Do</title>
</head>
<body>
<h1>To Do</h1>

<ul>
  <li> Streamline the
more»

/usr/share/cain/help/ToDo.htm

<html>
<head>
<title>To Do</title>
</head>
<body>
<h1>To Do</h1>

<ul>
  <li> Streamline the proces
more»

Browse inside cain_1.9-4_all.deb

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