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jalview

multiple alignment editor

JalView is a Java alignement editor that can work with sequence alignement produced by programs implementing alignment algorithms such as clustalw, kalign and t-coffee.

It has lots of features, is actively developed, and will compare advantageously to BioEdit, while being free as in free speech !

Homepage:
Package version:2.7.dfsg-2
Architecture:all
Distribution:Debian
Filename:jalview_2.7.dfsg-2_all.deb

/usr/share/doc/jalview/README

Jalview Readme
--------------


The source is available as a tar file and comes complete with the GNU General Public License. 

To build the application you will need a J2SDK 1.6+. 

An Ant build file (build.xml) is provided, you will need to install Apache Ant first. 
Run ant to view usage which will display a list of useful build targets.

Jalview is primarily developed with eclipse, and a .proj
more»

/usr/share/man/man1/jalview.1.gz

JALVIEW(1)                                                JALVIEW(1)



NAME
       jalview - Sequence alignement viewer

SYNOPSIS
       jalview


DESCRIPTION
       jalview provides facilities for viewing/editing and otherwise
       manipulating sequence alignments (DNA, amino acids).



JAVA-WRAPPERS NOTE
       This program is a shell script wrapper  based  on  java-wrap‐
       pers(7).  Y
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/usr/share/doc/jalview/changelog.Debian.gz

jalview (2.7.dfsg-2) unstable; urgency=low

  * Upload to unstable now that jmol is there too
  * Pull patches/newer-jmol-api.diff from upstream's git repository to
    make jalview work with jmol currently in unstable.

 -- Vincent Fourmond <fourmond@debian.org>  Mon, 07 Nov 2011 20:47:14 +0100

jalview (2.7.dfsg-1) experimental; urgency=low

  * Initial release (Closes: #507436)
  * Adding a deb
more»

/usr/share/doc/jalview/copyright

Format: http://anonscm.debian.org/viewvc/dep/web/deps/dep5.mdwn?revision=174
Upstream-Name: jalview

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