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libbiojava-java-demos

Example programs for BioJava

The package comes with a wealth of use cases for BioJava. It is generated together with the API documentation but because of its size of ~3.7MB it was decided to distribute it separately.
Homepage:
Package version:1:1.7.1-1
Architecture:all
Distribution:Debian
Filename:libbiojava-java-demos_1.7.1-1_all.deb

/usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/ReadMe

Example output files from NCBI BLAST.

/usr/share/doc/libbiojava-java-demos/examples/game/README.txt

To test the GAME parser, type:-
javac SeqIOTatler.java
javac TestGAME.java

To test on an annotaion only GAME file:-
java TestGAME AE002734.game

To test on a full fledged sequence file, down laod one from www.fruitfly.org.

Have fun,
David Huen, Dept. of Genetics, Univ. of Cambridge


/usr/share/doc/libbiojava-java-demos/changelog.Debian.gz

biojava-live (1:1.7.1-1) unstable; urgency=low

  * New upstream version.
  * New epoch
     - because of an unfortunate versioning of previous upload
     - to indicate the now happening BioJava Hackathon in Cambridge, UK

 -- Steffen Moeller <moeller@debian.org>  Wed, 20 Jan 2010 02:08:17 +0100

biojava-live (1.7.svn.20090419-3) unstable; urgency=low

  * debian/control:
     - Conflicts: libbio
more»

/usr/share/doc/libbiojava-java-demos/copyright

This package was debianized by Steffen Moeller <moeller@debian.org> on
Wed, 31 Dec 2008 01:26:45 +01
more»

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