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libbiojava-java

Java API to biological data and applications

BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It includes objects for manipulating sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, and powerful analysis and statistical routines including a dynamic programming toolkit.

BioJava is provided by a vibrant community which meets annually at the Bioinformatics Open Source Conference (BOSC) that traditionally accompanies the Intelligent Systems in Molecular Biology (ISMB) meeting. Much like BioPerl, the employment of this library is valuable for everybody active in the field because of the many tricks of the trade one learns just by communicating on the mailing list.

If using BioJava, please cite: R.C.G. Holland, T. Down, M. Pocock, A. Prlić, D. Huen, K. James, S. Foisy, A. Dräger, A. Yates, M. Heuer; M.J. Schreiber (2008) "BioJava: an Open-Source Framework for Bioinformatics" Bioinformatics 24(18):2096-2097.

This is a wrapper package which should enable smooth upgrades to new versions.

Homepage:
Package version:1:1.7.1-1
Architecture:all
Distribution:Debian
Filename:libbiojava-java_1.7.1-1_all.deb

/usr/share/doc/libbiojava-java/README

Welcome to BioJava.

BioJava is an open-source initiative with the aim of providing the
biological community with objects for representing and manipulating
biological information. We hope that it becomes the one-stop solution for
every-day biological programming.

This distribution contains the BioJava classes and resources, along with
scripts for building the .class files and the documentation tr
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/usr/share/doc/libbiojava-java/README.biosql

Biojava & BioSQL Readme

We STRONGLY recommend that you use biojavax and hibernate to interact with biosql
databases from version 1.5 on. Please refer to 
http://biojava.org/wiki/BioJava:BioJavaXDocs#BioSQL_and_Hibernate. for details.

Legacy information for biojava 1.4 is provided below. Note that we no longer actively
support the old biojava-biosql bindings.


##LEGACY INFORMATION##

External de
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/usr/share/doc/libbiojava-java/changelog.Debian.gz

biojava-live (1:1.7.1-1) unstable; urgency=low

  * New upstream version.
  * New epoch
     - because of an unfortunate versioning of previous upload
     - to indicate the now happening BioJava Hackathon in Cambridge, UK

 -- Steffen Moeller <moeller@debian.org>  Wed, 20 Jan 2010 02:08:17 +0100

biojava-live (1.7.svn.20090419-3) unstable; urgency=low

  * debian/control:
     - Conflicts: libbio
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/usr/share/doc/libbiojava-java/copyright

This package was debianized by Steffen Moeller <moeller@debian.org> on
Wed, 31 Dec 2008 01:26:45 +01
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