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perlprimer

[Biology] graphical design of primers for PCR

PerlPrimer is a free, open-source GUI application written in Perl that designs primers for standard PCR, bisulphite PCR, real-time PCR (QPCR) and sequencing. It aims to automate and simplify the process of primer design.

It nicely communicates with the Ensembl project if online for further insights into the gene structure.

Homepage: http://perlprimer.sourceforge.net

Homepage:-
Package version:1.1.14-1
Architecture:all
Distribution:Debian
Filename:perlprimer_1.1.14-1_all.deb

/usr/share/doc/perlprimer/README.Debian

perlprimer for Debian
---------------------

The REBASE file is ok to be included with PerlPrimer, this was
checked with the REBASE maintainer.

Steffen

 -- Steffen Moeller <moeller@pzr.uni-rostock.de>, Thu,  6 Jan 2005 22:00:24 +0100

/usr/share/doc/perlprimer/ReadMe.txt.gz

PerlPrimer
----------

Copyright � 2003-2006, Owen Marshall (owenjm@users.sourceforge.net)


Contents
--------

1. Introduction
2. Installation / Using the program
3. Links to external programs
4. Suggestions/patches/bugs/support


1. Introduction
---------------

Perlprimer is a GUI application that designs primers for standard PCR, bisulphite PCR, Real-time PCR (QPCR) and seque
more»

/usr/share/man/man1/perlprimer.1.gz

PERLPRIMER(1)                                          PERLPRIMER(1)



NAME
       perlprimer  -  graphically  specify  amplicon  of DNA or mRNA
       sequences and design primers

SYNOPSIS
       perlprimer

DESCRIPTION
       PerlPrimer calculates primer  melting  temperature  using  J.
       SantaLucia's extensive nearest-neighbour thermodynamic param‐
       eters. To adjust for the salt 
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/usr/share/doc/perlprimer/changelog.Debian.gz

perlprimer (1.1.14-1) unstable; urgency=medium

  * New upstream release: Ensembl compatibility rest
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/usr/share/doc/perlprimer/changelog.gz

18/10/06  (PerlPrimer-1.1.14)
- Ensembl compatibility restored once again (slight change in the sear
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/usr/share/doc/perlprimer/todo

For v1.2

*  Blast search dialogue should include a list of sequences that match both the forward an
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/usr/share/doc/perlprimer/copyright

This package was debianized by Steffen Moeller <steffen_moeller@gmx.de> on Thu,
6 Jan 2005 22:00:24 
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