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profbval

predictor of flexible/rigid protein residues from sequence

PROFbval can be useful for both protein structure and function predictions. For instance, a biologist can locate potentially antigenic determinants by identifying the most flexible residues on the protein surface. Additionally, a crystallographer can locate residues that potentially have high experimental B-values.

PROFbval takes the following input, further described on profbval(1): * a protein sequence in a FASTA file * secondary structure and solvent accessibility prediction by prof(1) * an HSSP file

Background: the mobility of a given residue on the protein surface is related to its functional role. Therefore, identification of extremely rigid or flexible residues on the protein surface is helpful for identifying functionally important residues in proteins. A common measure of atom mobility in proteins is B-value data from x-ray crystallography structures. PROFbval is the first tool to predict normalized backbone B-values from amino-acid sequence.

Homepage:
Package version:1.0.22-1
Architecture:all
Distribution:Debian
Filename:profbval_1.0.22-1_all.deb

/usr/share/doc/profbval/README

something something

/usr/share/man/man1/profbval.1.gz

PROFBVAL(1)                 User Commands                PROFBVAL(1)



NAME
       profbval - predicts flexibile/rigid residues from sequence

SYNOPSIS
       profbval <FASTA_FILE> <RDBPROF_FILE> <HSSP_FILE>
       <OUTPUT_FILE[,OUTPUT_FILE,...]> <WINDOW>
       <OUTPUT_MODE[,OUTPUT_MODE,...]> <DEBUG>

DESCRIPTION
       PROFbval is a neural-network based trained on backbone
       B-value data f
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/usr/share/doc/profbval/changelog.Debian.gz

profbval (1.0.22-1) unstable; urgency=low

  * Initial release in Debian (Closes: #680140)

 -- Laszlo Kajan <lkajan@rostlab.org>  Tue, 14 Aug 2012 13:30:13 +0200

profbval (1.0.16) unstable; urgency=low

  * man page update for multiple output files and formats
  * moved references to PP standard section

 -- Laszlo Kajan <lkajan@rostlab.org>  Mon, 16 May 2011 13:37:18 +0200

profbval (1.0.15) un
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/usr/share/doc/profbval/changelog.gz

profbval (1.0.22) unstable; urgency=low

  * Replaced non-free examples with free examples.

 -- Las
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/usr/share/doc/profbval/copyright

Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: profbval
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