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velvet-example

Example data for the Velvet sequence assembler

Variants:
Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom.

Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.

This package contains the example data distributed in the sources of Velvet, a de novo genomic assembler.

Homepage:
Package version:1.0.02~nozlibcopy-1
Architecture:all
Distribution:Debian
Filename:velvet-example_1.0.02~nozlibcopy-1_all.deb

/usr/share/doc/velvet-example/changelog.Debian.gz

velvet (1.0.02~nozlibcopy-1) unstable; urgency=low

  * New upstream version
  * Source format 3.0 (quilt)
  * debian/control:
    - Recommends: python (some new scripts in /usr/share/velvet/contrib
      are Python scripts)
    - Build-Depends: quilt
  * debian/rules:
    include /usr/share/cdbs/1/rules/patchsys-quilt.mk
    (instead of simple-patchsys)
  * debian/patches: Switch to quilt
  * deb
more»

/usr/share/doc/velvet-example/changelog.gz

V. 0.7.13
- m64 flag for Sparc/Solaris computing
- Color space makefile
- Crashing parsing bug
- Crashing initialisation bug
- No more stuttering of tandem repeats after Pebble resolution

V 0.7.14
- Crashing bug in long read concatenation

V 0.7.15
- Tiny colorspace bug in sequence expander
- Crashing bug in Pebble pointers

V 0.7.16
- Bug in AMOS output
- Crashing bug in file parsing
- Infinite 
more»

/usr/share/doc/velvet-example/copyright

Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.

Name    :  Velvet
Contact :  Daniel Zerbino <zerbino@ebi.ac.uk>
Source  :  http://www.ebi.ac.uk/~zerbino/velvet/velvet_0.7.56.tgz

Copyright: © 2006-2010 Daniel Zerbino <zerbino@ebi.ac.uk>
           © 2000-2005 Guy St.C. Slater <guy@ebi.ac.uk>
           ©   2009    John Marshall <jm18@sanger.ac.uk>
           ©   
more»

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