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seqan-apps

A C++ template library for the analysis of sequences

Variants:
SeqAn is a C++ template library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. This library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries. SeqAn is easy to use and simplifies the development of new software tools with a minimal loss of performance. This package contains the applications dfi, pair_align, micro_razers, seqan_tcoffee, seqcons, razers and tree_recon.
Homepage:
Package version:1.2-1
Architecture:amd64
Distribution:Debian
Filename:seqan-apps_1.2-1_amd64.deb

/usr/share/doc/seqan-apps/README

This is SeqAn, the C++ template library for sequence analysis

See http://www.seqan.de for more information

Read "docs/Page_Installation.html" for detailed installation instructions.


Folders:
========

"apps":  SeqAn applications
"cmake": CMake files to create your own project files
"demos": SeqAn demos, see also "docs/INDEXPAGE_Demo.html"
"docs":  HTML-Documentation
"seqan": SeqA
more»

/usr/share/doc/seqan-apps/README.dfi

DFI - The Deferred Frequency Index

This package contains the implementation of the DFI algorithm 
published in "Efficient string mining under constraints via the 
deferred frequency index".

There are executables compiled for various platforms:
  dfi_windows.exe  dfi for Windows
  dfi_linux        dfi for GNU Linux x86
  dfi_linux64      dfi for GNU Linux x86-64
  dfi_darwin       dfi for Mac OS 
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/usr/share/doc/seqan-apps/README.micro_razers.gz

*** MicroRazerS - Rapid Alignment of Small RNA Reads ***
http://www.seqan.de/projects/microRazers.html

---------------------------------------------------------------------------
Table of Contents
---------------------------------------------------------------------------
  1.   Overview
  2.   Installation
  3.   Usage
  4.   Output Format
  5.   Contact

----------------------------------------
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/usr/share/doc/seqan-apps/README.razers.gz

*** RazerS - Fast Read Mapping with Sensitivity Control ***
http://www.seqan.de/projects/razers.html
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/usr/share/doc/seqan-apps/README.seqan_tcoffee

*************************************************
* Multiple sequence alignment - SeqAn::T-Coffee *

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/usr/share/man/man1/dfi.1.gz

DFI(1)                      User Commands                     DFI(1)



NAME
       DFI - The Deferr
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/usr/share/man/man1/micro_razers.1.gz

MICRORAZERS(1)              User Commands             MICRORAZERS(1)



NAME
       MicroRazerS - Ra
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/usr/share/man/man1/pair_align.1.gz

PAIRALIGN(1)                User Commands               PAIRALIGN(1)



NAME
       pair_align - Pai
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