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clustalw

global multiple nucleotide or peptide sequence alignment

Variants:
This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted.

The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM.

Homepage:
Package version:2.0.12-1
Architecture:amd64
Distribution:Debian
Filename:clustalw_2.0.12-1_amd64.deb

/usr/share/doc/clustalw/README

Please see also ftp://ftp.ebi.ac.uk/pub/software/clustalw2/README
and http://www.clustal.org/

HOWTO COMPILE THE SOURCE AND INSTALL
----------------------------------------------------------------------

You will need a Unix environment with a working C++ compiler to
compile the ClustalW source. We recommened GCC>=4.2. ICC users
need to configure the package as follows:
./configure CXX=icpc

For c
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/usr/share/doc/clustalw/README.Debian

ClustalW for DEBIAN
-------------------

The packaging of ClustalW and ClustalX was recently split to better
reflect the handling of upstream and thus reduce our effort. The name of
the binary remains clustalw instead of upstream's clustalw2. If there
are any problems with this approeach, then please inform us about it.
At the moment, there can only be one installation of ClustalW at a time.
This 
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/usr/share/man/man1/clustalw.1.gz

CLUSTALW(1)                Clustal Manual                CLUSTALW(1)



NAME
       clustalw - Multiple alignment of nucleic acid and protein
       sequences

SYNOPSIS
       clustalw [-infile] file.ext [OPTIONS]

       clustalw [-help | -fullhelp]

DESCRIPTION
       Clustal W is a general purpose multiple alignment program for
       DNA or proteins.

       The program performs simultaneous a
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/usr/share/doc/clustalw/changelog.Debian.gz

clustalw (2.0.12-1) unstable; urgency=low

  * New upstream release fixing many bugs
    (see /usr/s
more»

/usr/share/doc/clustalw/changelog.gz

----------------------------------------------------------------------
Version 2.0.12
--------------
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/usr/share/doc/clustalw/LICENSE

Licensing ClustalW and ClustalX

Date:29 November 2007

The copyright for ClustalW and ClustalX 
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/usr/share/doc/clustalw/copyright

Name      : Clustal W
Contact   : clustalw@ucd.ie
Source    : http://www.clustal.org/download/curren
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