Filewatcher File Search File Search
Catalog
Content Search
» » » » » »

embassy-phylip

EMBOSS conversions of the programs in the phylip package

This package is the adaptation of the PHYLIP package in which its programs can operate with the biological sequence formats and databases of the European Molecular Biology Open Software Suite (EMBOSS). The software packages adapted for EMBOSS are called EMBASSY.

PHYLIP (the PHYLogeny Inference Package) is a package of programs for inferring phylogenies (evolutionary trees). Methods that are available in the package include parsimony, distance matrix, and likelihood methods, including bootstrapping and consensus trees. Data types that can be handled include molecular sequences, gene frequencies, restriction sites and fragments, distance matrices, and discrete characters.

The EMBASSY PHYLIP programs all have the prefix "f" to distinguish them from the original programs and avoid namespace conflict.

Homepage:
Package version:3.69+20110714-1
Architecture:amd64
Distribution:Debian
Filename:embassy-phylip_3.69+20110714-1_amd64.deb

/usr/share/doc/embassy-phylip/README

This is the EMBOSS integrated version of PHYLIP 3.69

If you require the original PHYLIP 3.69 distribution, you should
obtain it from the author, Joe Felsenstein, at
http://evolution.gs.washington.edu/phylip/software.html

This file records the steps involved in making PHYLIP 3.69 compatible
with EMBOSS as an EMBASSY package. The procedure is relatively simple,
compared to other packages, as PHYLI
more»

/usr/share/man/man1/fclique.1e.gz

FCLIQUE(1e)           EMBOSS Manual for Debian           FCLIQUE(1e)



NAME
       fclique - Largest clique program

SYNOPSIS
       fclique -infile discretestates [-ancfile properties]
               [-factorfile properties] [-weights properties]
               [-cliqmin integer] [-outgrno integer]
               -outfile outfile [-trout toggle] -outtreefile outfile
               [-printdata bo
more»

/usr/share/man/man1/fconsense.1e.gz

FCONSENSE(1e)         EMBOSS Manual for Debian         FCONSENSE(1e)



NAME
       fconsense - Majority-rule and strict consensus tree

SYNOPSIS
       fconsense -intreefile tree [-method list] -mlfrac float
                 [-root toggle] [-outgrno integer] -outfile outfile
                 [-trout toggle] -outtreefile outfile
                 [-progress boolean] [-treeprint boolean]
           
more»

/usr/share/man/man1/fcontml.1e.gz

FCONTML(1e)           EMBOSS Manual for Debian           FCONTML(1e)



NAME
       fcontml - Gene f
more»

/usr/share/man/man1/fcontrast.1e.gz

FCONTRAST(1e)         EMBOSS Manual for Debian         FCONTRAST(1e)



NAME
       fcontrast - Cont
more»

/usr/share/man/man1/fdiscboot.1e.gz

FDISCBOOT(1e)         EMBOSS Manual for Debian         FDISCBOOT(1e)



NAME
       fdiscboot - Boot
more»

/usr/share/man/man1/fdnacomp.1e.gz

FDNACOMP(1e)          EMBOSS Manual for Debian          FDNACOMP(1e)



NAME
       fdnacomp - DNA c
more»

/usr/share/man/man1/fdnadist.1e.gz

FDNADIST(1e)          EMBOSS Manual for Debian          FDNADIST(1e)



NAME
       fdnadist - Nucle
more»

Browse inside embassy-phylip_3.69+20110714-1_amd64.deb

         [DIR]DEBIAN/ (2)  65535+ mirrors
         [DIR]usr/ (2)  65535+ mirrors

Download embassy-phylip_3.69+20110714-1_amd64.deb

Results 1 - 1 of 1
Help - FTP Sites List - Software Dir.
Search over 15 billion files
© 1997-2016 FileWatcher.com