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libzerg-perl

fast perl module for parsing the output of NCBI BLAST programs

Variants:
The Zerg library contains a C/flex lexical scanner for BLAST reports and a set of supporting functions. It is centered on a "get_token" function that scans the input for specified lexical elements and, when one is found, returns its code and value to the user.

It is intended to be fast: for that we used flex, which provides simple regular expression matching and input buffering in the generated C scanner. And it is intended to be simple in the sense of providing just a lexical scanner, with no features whose support could slow down its main function.

Homepage:
Package version:1.0.4-2+b1
Architecture:amd64
Distribution:Debian
Filename:libzerg-perl_1.0.4-2+b1_amd64.deb

/usr/share/doc/libzerg-perl/README

Introduction
============

This is the Perl module for the Zerg BLAST parsing library version 1.0.


License terms
=============

Copyright (C) 2002  Apu��Paquola - Instituto de Qu�mica -
                    Universidade de S�o Paulo - Brasil

This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software 
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/usr/share/doc/libzerg-perl/README.Debian

libzerg-perl for Debian
-----------------------

Reference
=========

* Paquola, Apuã C M, Machado, Abimael A, Reis, Eduardo M, Da Silva, Aline M, and Verjovski-Almeida, Sergio: Zerg: a very fast BLAST parser library., Bioinformatics 19(8), volume 19, 1035–6, May 2003

 -- Laszlo Kajan <lkajan@rostlab.org>  Fri, 16 Sep 2011 11:52:32 +0200

/usr/share/man/man3/Zerg.3pm.gz

Zerg(3pm)        User Contributed Perl Documentation       Zerg(3pm)



NAME
       Zerg - a lexical scanner for BLAST reports.

SYNOPSIS
       use Zerg;

DESCRIPTION
       This manpage describes the Zerg library and its interface for
       use with Perl.

       The Zerg library contains a C/flex lexical scanner for BLAST
       reports and a set of supporting functions. It is centered on
    
more»

/usr/share/man/man3/Zerg::Report.3pm.gz

Report(3pm)      User Contributed Perl Documentation     Report(3pm)



NAME
       Zerg::Report - g
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/usr/share/doc/libzerg-perl/changelog.Debian.gz

libzerg-perl (1.0.4-2+b1) sid; urgency=low

  * Binary-only non-maintainer upload for amd64; no sour
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/usr/share/doc/libzerg-perl/changelog.gz

Revision history for Perl extension Zerg.

0.01  Wed Aug 21 18:18:14 2002
	- original version; creat
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/usr/share/doc/libzerg-perl/copyright

This work was packaged for Debian by:

    Laszlo Kajan <lkajan@rostlab.org> on Fri, 16 Sep 2011 11:
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