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EMBOSS Libraries

This package contains the core libraries of the European Molecular Biology Open Software Suite, EMBOSS.

AJAX covers standard data structures, including strings, sequences, file handles, queues, hashes, heaps, lists, dictionaries, trees and dynamic arrays. It also covers standard algorithms including comparisons, pattern matching, sorting, and iterators. AJAX will also provide a set of high level graphics functions suited to the needs of sequence analysis applications.

The NUCLEUS library provides higher-level functions specific to molecular sequence analysis, including sequence comparisons, translation, codon usage and annotation.

It also contains a eplplot, an EMBOSS, a fork of the plplot library.

In Debian, these libraries are to be considered private.

Package version:6.3.1-6~bpo60+1


emboss (6.3.1-6~bpo60+1) squeeze-backports; urgency=low

  * Backport for Squeeze (no changes needed).

 -- Charles Plessy <>  Mon, 14 Feb 2011 11:20:43 +0900

emboss (6.3.1-6) unstable; urgency=low

  * All EMBOSS libraries are to be considered private. The libajax* and
    libnucleus* are merged in the emboss-lib package, which is moved
    from the ‘libs’ to the ‘science�


Version 6.3.0 15-Jul-2010
	'ensembl' is a new access method for accessing Ensembl
	from MySQL. Queries take the form:
	   seqret ensembl:human:ENST00000262160
	   seqret ensembl:human:ENST0000026216?
	   seqret ensembl:human:ENSE00001533831
	showing that transcripts, translations and exons are retrievable
	and that partial queries are allowed. Example database
	definitions are given in the emboss.


The EMBOSS package for Debian was initially prepared by Matt Hope
( in 2002-2004 and released on
( The package distributed in Debian
was prepared by the "pkg-emboss" project in 2006, using the work of Matt Hope
as a starting point. The packaging work of the pkg-emboss project is in the
public domain unless stated otherwise.

Source: ftp:/

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