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melting

computing the melting temperature of nucleic acid duplex

Variants:
This program computes, for a nucleic acid duplex, the enthalpy, the entropy and the melting temperature of the helix-coil transitions. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program first computes the hybridisation enthalpy and entropy from the elementary parameters of each Crick's pair by the nearest-neighbor method. Then the melting temperature is computed. The set of thermodynamic parameters can be easily changed, for instance following an experimental breakthrough. Melting was published in Le Novère N. (2001), Bioinformatics, 17: 1226-1227.
Homepage:
Package version:4.2h-3
Architecture:amd64
Distribution:Debian
Filename:melting_4.2h-3_amd64.deb

/usr/share/doc/melting/README

[INSTALLATION]

Unbundle the distribution in the proper place (e.g. /usr/local/ or c:\Program
Files)

Some pre-compiled binaries are located in the directory BIN.  If no binary
suitable for your OS is provided, or if you want to compile the programme
yourself (a good idea), edit the file 'SRC/makefile' to suit your needs
(particularly the default path for the files containing the nearest- neighbor
more»

/usr/share/man/man1/melting.1.gz

MELTING(1)               Melting user-guide               MELTING(1)



NAME
       melting - nearest-neighbor computation of nucleic acid hybri‐
       dation

SYNOPSIS
       melting [options]

DESCRIPTION
       Melting computes, for a nucleic acid duplex, the enthalpy and
       the  entropy of the helix-coil transition, and then its melt‐
       ing temperature.  Three types of hybridisat
more»

/usr/share/doc/melting/changelog.Debian.gz

melting (4.2h-3) unstable; urgency=low

  * Changed the doc-base section according to the new policy.
  * Updated my email address.

 -- Charles Plessy <plessy@debian.org>  Sun, 06 Jul 2008 18:11:48 +0900

melting (4.2h-2) unstable; urgency=low

  [ Charles Plessy ]
  * Moved the Homepage: field out from the package's description.
  * Debian menu transition: updated debian/melting.doc-base.

  [ D
more»

/usr/share/doc/melting/changelog.gz

[08/AUG/2007] Nicolas Le Novère (lenov@ebi.ac.uk)

	Move from isolatin-1 to utf-8

	version 4.2h

[
more»

/usr/share/doc/melting/copyright

This package was debianized by Charles Plessy
<charles-debian-nospam@plessy.org> on Wed, 11 Apr 2007
more»

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