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melting

compute the melting temperature of nucleic acid duplex

Variants:
This program computes, for a nucleic acid duplex, the enthalpy, the entropy and the melting temperature of the helix-coil transitions. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program first computes the hybridisation enthalpy and entropy from the elementary parameters of each Crick's pair by the nearest-neighbor method. Then the melting temperature is computed. The set of thermodynamic parameters can be easily changed, for instance following an experimental breakthrough.
Homepage:
Package version:4.3c-1
Architecture:amd64
Distribution:Debian
Filename:melting_4.3c-1_amd64.deb

/usr/share/doc/melting/README

[INSTALLATION]

Unbundle the distribution in the proper place (e.g. /usr/local/ or c:\Program
Files) and the file melting-gui.desktop in /usr/share/applications. 

Some pre-compiled binaries are located in the directory BIN.  If no binary
suitable for your OS is provided, or if you want to compile the programme
yourself (a good idea), edit the file 'SRC/makefile' to suit your needs
(particularly t
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/usr/share/doc/melting/README.Debian

Meting for Debian
─────────────────

Notes about how this package was tested:

After building locally on the developper’s computer, the programs melting and
tkmelting were briefly tested before uploading the package to the Debian
archive.

 - melting was ran with the following command line:
   melting -SAAAAAAAAAAAAAAA -HA -k0.01 -P0.01

 - The tkmelting interfa
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/usr/share/man/man1/melting.1.gz

MELTING(1)               Melting user-guide               MELTING(1)



NAME
       melting - nearest-neighbor computation of nucleic acid hybri‐
       dation

SYNOPSIS
       melting [options]

DESCRIPTION
       Melting computes, for a nucleic acid duplex, the enthalpy and
       the  entropy of the helix-coil transition, and then its melt‐
       ing temperature.  Three types of hybridisat
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/usr/share/doc/melting/changelog.Debian.gz

melting (4.3c-1) unstable; urgency=low

  * New upstream release:
    calls melting from the PATH wi
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/usr/share/doc/melting/changelog.gz

[23/10/2009] Marine Dumousseau (marine@ebi.ac.uk)
	Fixed a bug in bre07a.nn.
	version 4.3c
[01/JUN/2
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/usr/share/doc/melting/copyright

Format: Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.

Name: Melting
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