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probalign

multiple sequence alignment using partition function posterior probabilities

Variants:
Probalign uses partition function posterior probability estimates to compute maximum expected accuracy multiple sequence alignments. It performs statistically significantly better than the leading alignment programs Probcons v1.1, MAFFT v5.851, and MUSCLE v3.6 on BAliBASE 3.0, HOMSTRAD, and OXBENCH benchmarks. Probalign improvements are largest on datasets containing N/C terminal extensions and on datasets with long and heterogeneous length sequences. On heteregeneous length datasets containing repeats Probalign alignment accuracy is 10% and 15% than the other three methods when standard deviation of length is at least 300 and 400.
Homepage:
Package version:1.4-2
Architecture:amd64
Distribution:Debian
Filename:probalign_1.4-2_amd64.deb

/usr/share/doc/probalign/README

PROBALIGN Version 1.4 (Nov 2010)
Written by Satish Chikkagoudar and Usman Roshan using PROBCONS 1.1
code (written by Chuong Do) and based upon probA (written by Ulrike
Muckstein).

-----------------------------------------------------------------

PROBALIGN has been made freely available as PUBLIC DOMAIN
software and hence is not subject to copyright in the  United
States.  This system and/or any 
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/usr/share/man/man1/probalign.1.gz

PROBALIGN(1)                User Commands               PROBALIGN(1)



NAME
       probalign - Align sequences in MFAFILE(s) and print result to
       standard output

DESCRIPTION
       PROBALIGN Version 1.4  (Nov  2010)  aligns  multiple  protein
       sequences  and  prints  to  the  standard  output. Written by
       Satish Chikkagoudar and Usman Roshan using code from PROBCONS
       vers
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/usr/share/doc/probalign/changelog.Debian.gz

probalign (1.4-2) unstable; urgency=low

  * Standards-Version: 3.9.2 (no changes needed)
  * Debhelper 8 (control+compat)
  * debian/patches/fix-gcc-4.6.patch
    Closes: #624979

 -- Andreas Tille <tille@debian.org>  Mon, 02 May 2011 17:02:21 +0200

probalign (1.4-1) unstable; urgency=low

  * Initial release (Closes: #611828)
    (reupload with LGPL-3 license for debian/*)

 -- Andreas Tille <t
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/usr/share/doc/probalign/copyright

Format: http://dep.debian.net/deps/dep5/
Upstream-Name: Probalign
Upstream-Contact: Usman Roshan <us
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