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proftmb

per-residue prediction of bacterial transmembrane beta barrels

Variants:
proftmb predicts transmembrane beta-barrel (TMB) proteins in Gram-negative bacteria.

For each query protein, proftmb provides both a Z-value indicating that the protein actually contains a membrane barrel, and a four-state per-residue labeling of upward- and downward-facing strands, periplasmic hairpins and extracellular loops.

Homepage:
Package version:1.1.10-1
Architecture:amd64
Distribution:Debian
Filename:proftmb_1.1.10-1_amd64.deb

/usr/share/doc/proftmb/README

Welcome to ProfTMB, the Profile fed HMM for predicting
transmembrane beta barrels from sequence.

	This README file assumes you have successfully installed ProfTMB
as explained in the file INSTALL.

To run proftmb with example input, type:

proftmb @<full-path-to-options-file>

where <full-path-to-options-file> will be
'/usr/local/share/proftmb/options' or
'$(prefix)/share/proftmb/options'

if you
more»

/usr/share/man/man1/proftmb.1.gz

PROFTMB(1)                  User Commands                 PROFTMB(1)



NAME
       proftmb  -  per-residue prediction of bacterial transmembrane
       beta barrels

SYNOPSIS
       proftmb [options]

DESCRIPTION
       proftmb predicts bacterial transmembrane  beta  barrels  from
       sequence using profile fed Hidden Markov Models (HMM).

   Output format
       Self-annotating.   Letters  of
more»

/usr/share/doc/proftmb/changelog.Debian.gz

proftmb (1.1.10-1) unstable; urgency=low

  * New upstream release

 -- Laszlo Kajan <lkajan@rostlab.org>  Mon, 20 Feb 2012 17:27:43 +0100

proftmb (1.1.9-1) unstable; urgency=low

  * New upstream release

 -- Laszlo Kajan <lkajan@rostlab.org>  Fri, 17 Feb 2012 11:43:50 +0100

proftmb (1.1.8-1) unstable; urgency=low

  * Initial release (Closes: #659964)

 -- Laszlo Kajan <lkajan@rostlab.org>  We
more»

/usr/share/doc/proftmb/changelog.gz

proftmb (1.1.10) unstable; urgency=low

  * Corrected license: GPLv3
  * Silenced warnings in src/Zs
more»

/usr/share/doc/proftmb/copyright

Format: http://dep.debian.net/deps/dep5
Upstream-Name: proftmb
Source: ftp://rostlab.org/proftmb/pro
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