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tabix

generic indexer for TAB-delimited genome position files

Variants:
Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosme), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.
Homepage:
Package version:0.2.6-1
Architecture:amd64
Distribution:Debian
Filename:tabix_0.2.6-1_amd64.deb

/usr/share/doc/tabix/README.test

Notes on how to test tabix
──────────────────────────

The tabix package contains example data to test the tabix program.  It is
already compressed and indexed.  The following instruction decompress,
recompress, re-index and test the example data.

# Create a temporary file
TABIXDATA=$(mktemp)

# Uncompress example data
zcat /usr/share/doc/tabix/
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/usr/share/doc/tabix/NEWS.gz

Release 0.2.4 (10 April, 2011)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Notable changes:

 * Give an error if the index file is older than the data file.

 * Avoid a segfault given flawed input.

 * Added Python APIs contributed by Hyeshik Chang. The new APIs do not bind to
   the dynamic library and are reported to be faster. Pysam also comes with a
   tabix binding.

 * Added option "-r" for efficient he
more»

/usr/share/man/man1/tabix.1.gz

tabix(1)                Bioinformatics tools                tabix(1)



NAME
       bgzip - Block compression/decompression utility

       tabix  -  Generic  indexer  for TAB-delimited genome position
       files

SYNOPSIS
       bgzip [-cdhB] [-b virtualOffset] [-s size] [file]

       tabix [-0lf] [-p gff|bed|sam|vcf] [-s seqCol] [-b begCol] [-e
       endCol]  [-S  lineSkip]  [-c  metaChar]  
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/usr/share/doc/tabix/changelog.Debian.gz

tabix (0.2.6-1) unstable; urgency=low

  60eb374 Imported Upstream version 0.2.6
  9de2ad5 Removed p
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/usr/share/doc/tabix/changelog.gz

------------------------------------------------------------------------
r942 | lh3lh3 | 2011-03-31 
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/usr/share/doc/tabix/copyright

Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Source: http://qa.debian.o
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