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tigr-glimmer

Gene detection in archea and bacteria

Variants:
Developed by the TIGR institute this software detects coding sequences in bacteria and archea.

Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria and archaea. Glimmer (Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA.

Homepage:
Package version:3.02-2
Architecture:amd64
Distribution:Debian
Filename:tigr-glimmer_3.02-2_amd64.deb

/usr/share/doc/tigr-glimmer/README.Debian

tigr-glimmer for Debian
-----------------------

The glimmer software of the TIGR institute was renamed to tigr-glimmer
because of a name conflict with the GNOME library.  The package works
for me, most efforts went into the reformatting of the readme files
for the man pages, feedback is welcome. 

The upstream authors are very supportive of this debian package for
their software and I thank them 
more»

/usr/share/doc/tigr-glimmer/glimmer2_docs/README.gz

    This file and all files in this release of the Glimmer system are
    copyright (c) 1999 and (c) 2000 by Arthur Delcher, Steven Salzberg, 
    Simon Kasif, and Owen White.  All rights reserved.  Redistribution
    is not permitted without the express written permission of
    the authors.

Glimmer 2.0 is described in:
  A.L. Delcher, D. Harmon, S. Kasif, O. White, and S.L. Salzberg.
  Improved
more»

/usr/share/man/man1/tigr-anomaly.1.gz

TIGR-GLIMMER(1)                                      TIGR-GLIMMER(1)



NAME
       tigr-glimmer — The program lacks a description

SYNOPSIS
       tigr-anomaly [>dna-file]  [>coord-file]

DESCRIPTION
OPTIONS
SEE ALSO
       tigr-glimmer3 (1), tigr-adjust (1), tigr-anomaly   (1), tigr-
       build-icm (1), tigr-check (1),  tigr-codon-usage  (1),  tigr-
       compare-lists (1), tigr-extract (1)
more»

/usr/share/man/man1/tigr-build-icm.1.gz

TIGR-GLIMMER     (1)   (1)                TIGR-GLIMMER     (1)   (1)



NAME
       tigr-glimmer  ��
more»

/usr/share/man/man1/tigr-extract.1.gz

TIGR-GLIMMER(1)                                      TIGR-GLIMMER(1)



NAME
       tigr-glimmer  ��
more»

/usr/share/man/man1/tigr-glimmer.1.gz

TIGR-GLIMMER(1)                                      TIGR-GLIMMER(1)



NAME
       tigr-glimmer  - 
more»

/usr/share/man/man1/tigr-glimmer3.1.gz

TIGR-GLIMMER(1)                                      TIGR-GLIMMER(1)



NAME
       tigr-glimmer  ��
more»

/usr/share/man/man1/tigr-long-orfs.1.gz

LONG-ORFS(1)                                            LONG-ORFS(1)



NAME
       long-orfs  —  
more»

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