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ampliconnoise

Programs for the removal of noise from 454 sequenced PCR amplicons

Variants:
AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:

Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences

Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.

Removing Noise From Pyrosequenced Amplicons Christopher Quince, Anders Lanzen, Russell J Davenport and Peter J Turnbaugh BMC Bioinformatics 2011, 12:38doi:10.1186/1471-2105-12-38

Homepage:
Package version:1.25-1
Architecture:armel
Distribution:Debian
Filename:ampliconnoise_1.25-1_armel.deb

/usr/share/doc/ampliconnoise/README.Debian

ampliconnoise for Debian
------------------------

See Doc.pdf for guidance on running this application.  Note that AmpliconNoise requires
flowgrams in text form to operate on.  If you only have the SFF files available then one 
way to export in text-based format is to use Qiime version 1.2.1 or newer and run the 
process_sff script with the -f flag.

/usr/share/man/man1/ampliconnoise.1.gz

AMPLICONNOISE(1)     AmpliconNoise Documentation    AMPLICONNOISE(1)



NAME
       AmpliconNoise - remove noise from high throughput nucleotide
       sequence data

VERSION
       This documentation refers to version 1.22

SYNOPSIS
       See /usr/share/doc/ampliconnoise/Doc.pdf.gz for details of
       how to run.

DESCRIPTION
       The following tools are included.  Most of them have an MPI
 
more»

/usr/share/doc/ampliconnoise/changelog.Debian.gz

ampliconnoise (1.25-1) unstable; urgency=low

  [ Steffen sponsoring Tim's update ]
  * Removed Steffen from uploader's list
  * Removing emacs-typical backup files from source tree

 -- Tim Booth <tbooth@ceh.ac.uk>  Sun, 21 Aug 2011 13:06:37 +0200

ampliconnoise (1.25-1) lucid; urgency=low

  * Rebuild for new version - minor fix from upstream

 -- Tim Booth <tbooth@ceh.ac.uk>  Wed, 17 Aug 2011 1
more»

/usr/share/doc/ampliconnoise/copyright

Format: http://dep.debian.net/deps/dep5/
Upstream-Name: AmpliconNoise
Upstream-Contact: Tim Booth <t
more»

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