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cd-hit

suite of programs designed to quickly group sequences

Variants:
cd-hit contains a number of programs designed to quickly group sequences. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. A number of other related programs are also in this package. Please see the cd-hit user manual, also part of this package, for further information.
Homepage:
Package version:4.6-2012-04-25-1
Architecture:armel
Distribution:Debian
Filename:cd-hit_4.6-2012-04-25-1_armel.deb

/usr/share/doc/cd-hit/README.Debian

Cd-hit for Debian
=================

Currently cd-hit is built with MPI support.  Please drop the Debian Med
team a note (or file a bug report using `reportbug cd-hit`) and ask us for
supporting an alternative package without MPI.

 -- Andreas Tille <tille@debian.org>  Thu, 26 Apr 2012 07:54:23 +0200


/usr/share/man/man1/cd-hit-2d-para.1.gz

CD-HIT-2D-PARA.PL(1)        User Commands       CD-HIT-2D-PARA.PL(1)



NAME
       cd-hit-2d-para.pl  -  divide a big clustering job into pieces
       to run cd-hit-2d or cd-hit-est-2d jobs

SYNOPSIS
       cd-hit-2d-para.pl options

DESCRIPTION
              This script divide a big clustering  job  into  pieces
              and  submit jobs to remote computers over a network to
              
more»

/usr/share/man/man1/cd-hit-para.1.gz

CD-HIT-PARA.PL(1)           User Commands          CD-HIT-PARA.PL(1)



NAME
       cd-hit-para.pl  -  divide a big clustering job into pieces to
       run cd-hit or cd-hit-est jobs

SYNOPSIS
       cd-hit-para.pl options

DESCRIPTION
              This script divide a big clustering  job  into  pieces
              and  submit jobs to remote computers over a network to
              make it para
more»

/usr/share/man/man1/cdhit-2d.1.gz

CD-HIT-2D(1)                User Commands               CD-HIT-2D(1)



NAME
       cdhit-2d - quick
more»

/usr/share/man/man1/cdhit-est-2d.1.gz

CD-HIT-EST-2D(1)            User Commands           CD-HIT-EST-2D(1)



NAME
       cdhit-est-2d  - 
more»

/usr/share/man/man1/cdhit-est.1.gz

CD-HIT-EST(1)               User Commands              CD-HIT-EST(1)



NAME
       cdhit-est - run 
more»

/usr/share/man/man1/cdhit.1.gz

CD-HIT(1)                   User Commands                  CD-HIT(1)



NAME
       cdhit - quickly 
more»

/usr/share/man/man1/psi-cd-hit-2d-g1.1.gz

PSI-CD-HIT-2D-G1.PL(1)      User Commands     PSI-CD-HIT-2D-G1.PL(1)



NAME
       psi-cd-hit-2d-g1
more»

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