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Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences
Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.
Removing Noise From Pyrosequenced Amplicons Christopher Quince, Anders Lanzen, Russell J Davenport and Peter J Turnbaugh BMC Bioinformatics 2011, 12:38doi:10.1186/1471-2105-12-38
ampliconnoise for Debian ------------------------ See Doc.pdf for guidance on running this application. Note that AmpliconNoise requires flowgrams in text form to operate on. If you only have the SFF files available then one way to export in text-based format is to use Qiime version 1.2.1 or newer and run the process_sff script with the -f flag.
AMPLICONNOISE(1) AmpliconNoise Documentation AMPLICONNOISE(1) NAME AmpliconNoise - remove noise from high throughput nucleotide sequence data VERSION This documentation refers to version 1.22 SYNOPSIS See /usr/share/doc/ampliconnoise/Doc.pdf.gz for details of how to run. DESCRIPTION The following tools are included. Most of them have an MPI more»
ampliconnoise (1.25-1) unstable; urgency=low [ Steffen sponsoring Tim's update ] * Removed Steffen from uploader's list * Removing emacs-typical backup files from source tree -- Tim Booth <firstname.lastname@example.org> Sun, 21 Aug 2011 13:06:37 +0200 ampliconnoise (1.25-1) lucid; urgency=low * Rebuild for new version - minor fix from upstream -- Tim Booth <email@example.com> Wed, 17 Aug 2011 1 more»
Format: http://dep.debian.net/deps/dep5/ Upstream-Name: AmpliconNoise Upstream-Contact: Tim Booth <t more»