Filewatcher File Search File Search
Catalog
Content Search
» » » » »

libbam-dev

manipulates nucleotide sequence alignments in BAM or SAM format

Variants:
The BAM library provides I/O and various operations on manipulating nucleotide sequence alignments in the BAM (Binary Alignment/Mapping) or SAM (Sequence Alignment/Map) format. It now supports importing from or exporting to SAM, sorting, merging, generating pileup, and quickly retrieval of reads overlapped with a specified region.
Homepage:
Package version:0.1.18-1
Architecture:i386
Distribution:Debian
Filename:libbam-dev_0.1.18-1_i386.deb

/usr/share/doc/libbam-dev/NEWS.gz

Beta Release 0.1.18 (2 September, 2011)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Notable changes in samtools:

 * Support the new =/X CIGAR operators (by Peter Cock).

 * Allow to subsample BAM while keeping the pairing intact (view -s).

 * Implemented variant distance bias as a new filter (by Petr Danecek).

 * Bugfix: huge memory usage during indexing

 * Bugfix: use of uninitialized variable i
more»

/usr/share/doc/libbam-dev/changelog.Debian.gz

samtools (0.1.18-1) unstable; urgency=low

  [b990d9d3] New upstream release.
  [d59366b9] Updated copyright statements.
  [aa08abe5] Compress binary packages with xz.
  [9a36c994] Added a DEP 3 header to debian/patches/no-pileup-tests.patch.

 -- Charles Plessy <plessy@debian.org>  Tue, 06 Sep 2011 16:52:04 +0900

samtools (0.1.17-1) unstable; urgency=low

  * New upstream release 0.1.17 (6 July,
more»

/usr/share/doc/libbam-dev/changelog.gz

------------------------------------------------------------------------
r925 | lh3lh3 | 2011-02-28 15:45:17 -0500 (Mon, 28 Feb 2011) | 2 lines
Changed paths:
   M /trunk/samtools/phase.c

minor changes to a heuristic rule

------------------------------------------------------------------------
r924 | lh3lh3 | 2011-02-28 15:24:04 -0500 (Mon, 28 Feb 2011) | 4 lines
Changed paths:
   M /trunk/samto
more»

/usr/share/doc/libbam-dev/AUTHORS

Heng Li from the Sanger Institute wrote most of the initial source codes
of SAMtools and various con
more»

/usr/share/doc/libbam-dev/copyright

Format: http://dep.debian.net/deps/dep5/
Source: http://sourceforge.net/projects/samtools/files/samt
more»

Browse inside libbam-dev_0.1.18-1_i386.deb

         [DIR]DEBIAN/ (2)  65535+ mirrors
         [DIR]usr/ (3)  65535+ mirrors

Download libbam-dev_0.1.18-1_i386.deb

Results 1 - 1 of 1
Help - FTP Sites List - Software Dir.
Search over 15 billion files
© 1997-2016 FileWatcher.com