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libbam-dev

manipulates nucleotide sequence alignments in BAM or SAM format

Variants:
The BAM library provides I/O and various operations on manipulating nucleotide sequence alignments in the BAM (Binary Alignment/Mapping) or SAM (Sequence Alignment/Map) format. It now supports importing from or exporting to SAM, sorting, merging, generating pileup, and quickly retrieval of reads overlapped with a specified region.
Homepage:
Package version:0.1.8-1
Architecture:i386
Distribution:Debian
Filename:libbam-dev_0.1.8-1_i386.deb

/usr/share/doc/libbam-dev/NEWS.gz

Beta Release 0.1.8 (11 July, 2010)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Notable functional changes:

 * Added the `reheader' command which replaces a BAM header with a new
   header. This command is much faster than replacing header by
   BAM->SAM->BAM conversions.

 * Added the `mpileup' command which computes the pileup of multiple
   alignments.

 * The `index' command now stores the number of m
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/usr/share/doc/libbam-dev/changelog.Debian.gz

samtools (0.1.8-1) unstable; urgency=low

  * New upstream release.
  * Updated the VCS fields to the current Git repository (debian/control).
  * Install python scripts in usr/share/samtools, and suggest python
    (debian/samtools.install, debian/rules, debian/control).
  * Incremented Standards-Version to reflect conformance with Policy 3.9.0
    (debian/control, no changes needed).
  * Added n
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/usr/share/doc/libbam-dev/changelog.gz

------------------------------------------------------------------------
r612 | lh3lh3 | 2010-07-11 21:08:56 -0400 (Sun, 11 Jul 2010) | 2 lines
Changed paths:
   M /trunk/samtools/knetfile.c

fixed a compiling issue for Windows

------------------------------------------------------------------------
r611 | lh3lh3 | 2010-07-11 20:59:15 -0400 (Sun, 11 Jul 2010) | 2 lines
Changed paths:
   M /trunk/
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/usr/share/doc/libbam-dev/AUTHORS

Heng Li from the Sanger Institute wrote most of the initial source codes
of SAMtools and various con
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/usr/share/doc/libbam-dev/copyright

Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.


Name      :  SAMtool
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