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Large Scale Machine Learning Toolbox

SHOGUN - is a new machine learning toolbox with focus on large scale kernel methods and especially on Support Vector Machines (SVM) with focus to bioinformatics. It provides a generic SVM object interfacing to several different SVM implementations. Each of the SVMs can be combined with a variety of the many kernels implemented. It can deal with weighted linear combination of a number of sub-kernels, each of which not necessarily working on the same domain, where an optimal sub-kernel weighting can be learned using Multiple Kernel Learning. Apart from SVM 2-class classification and regression problems, a number of linear methods like Linear Discriminant Analysis (LDA), Linear Programming Machine (LPM), (Kernel) Perceptrons and also algorithms to train hidden markov models are implemented. The input feature-objects can be dense, sparse or strings and of type int/short/double/char and can be converted into different feature types. Chains of preprocessors (e.g. substracting the mean) can be attached to each feature object allowing for on-the-fly pre-processing.

SHOGUN comes in different flavours, a stand-a-lone version and also with interfaces to Matlab(tm), R, Octave, Readline and Python. This package includes the developer files required to create stand-a-lone executables.

Package version:0.9.3-4


Explanation of directory content

README       - this file
Makefile     - to create release archives
src          - shogun source code
doc          - documentation (to be built using doxygen)
examples     - example files for all interfaces
applications - applications of shogun
testsuite    - the shogun test suite

The following table depicts the status of each inte


shogun (0.9.3-4) unstable; urgency=high

  * Workaround cdbs problem and hopefully only create doxygen doc once.
    - This should be a workaround for the FTBS caused by doxygen bugs.
    - Therefore increasing urgency to high.

 -- Soeren Sonnenburg <>  Tue, 17 Aug 2010 21:16:30 +0200

shogun (0.9.3-3) unstable; urgency=low

  * Do not call make doc on arch-dep targets but on inde


This program was downloaded from .

The main upstream Authors are
    Soeren Sonnenburg <>
    Gunnar Raetsch <>.

Copyright (C) 1999-2009 Fraunhofer Institute FIRST
Copyright (C) 1999-2010 Max Planck Society
Copyright (C) 2009-2010 Berlin Institute of Technology


    This program is free software; you can redis

Browse inside libshogun-dev_0.9.3-4_i386.deb

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