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seq-gen

simulate the evolution of nucleotide or amino acid sequences

Variants:
Seq-Gen is a program that will simulate the evolution of nucleotide or amino acid sequences along a phylogeny, using common models of the substitution process. A range of models of molecular evolution are implemented including the general reversible model. State frequencies and other parameters of the model may be given and site-specific rate heterogeneity may also be incorporated in a number of ways. Any number of trees may be read in and the program will produce any number of data sets for each tree. Thus large sets of replicate simulations can be easily created. It has been designed to be a general purpose simulator that incorporates most of the commonly used (and computationally tractable) models of molecular sequence evolution.
Homepage:
Package version:1.3.3-1
Architecture:i386
Distribution:Debian
Filename:seq-gen_1.3.3-1_i386.deb

/usr/share/man/man1/seq-gen.1.gz

SEQ-GEN(1)                  User Commands                 SEQ-GEN(1)



NAME
       seq-gen - Sequence Generator

SYNOPSIS
       seq-gen  [-m  MODEL]  [-l  #] [-n #] [-p #] [-s # | -d #] [-k
       #][-c #1 #2 #3 | -a # [-g #]] [-f e | #] [-t # | -r #][-z  #]
       [-o[p][r][n]] [-w[a][r]] [-x NAME] [-q] [-h] [treefile]

DESCRIPTION
       Sequence Generator - seq-gen Version 1.3.3

       -l: #
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/usr/share/doc/seq-gen/changelog.Debian.gz

seq-gen (1.3.3-1) unstable; urgency=low

  [ Alexandre Mestiashvili ]
  * New upstream release 1.3.3 
  * debian/control section changed to non-free/science
  * fixed debian/watch and debian/get-orig-source scripts
  * debian/seq-gen.1 fixed hyphen-used-as-minus-sign warning

  [ Andreas Tille ]
  * debian/control: Fixed Vcs fields
  * debian/upstream: Added citations
  * debhelper level 9 (contro
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/usr/share/doc/seq-gen/copyright

Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: seq-gen
Source: http://tree.bio.ed.ac.uk/software/seqgen/

Files: *
Copyright: © Copyright (c)1996-2011, Andrew Rambaut & Nick Grassly
   Institute of Evolutionary Biology, University of Edinburgh
   All rights reserved.                          
License: BSD

Files: source/eigen.*
Copyright: © Copyright (c)
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